View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_high_7 (Length: 672)
Name: NF11301_high_7
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 19 - 640
Target Start/End: Complemental strand, 8339353 - 8338734
Alignment:
| Q |
19 |
tcatgaaggtggggtccaatggcagcacgaacccaagtctctaccgaatattcacgaaacttatcgtccgagaaggaatgaacacagctgagactcatct |
118 |
Q |
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| T |
8339353 |
tcatgaaggtggggtccaatggcagcacgaacccaagtctctacggaatattcacgaaacttatcgtccgtgaaggaatgaacacagctgagactcatct |
8339254 |
T |
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| Q |
119 |
tctgaatggcacggggattacgtaggagagccaggacaacgttaactagaagagcgaaactcttgaaacgctccgctggttggtcgacatactcatggga |
218 |
Q |
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| T |
8339253 |
tctgaatggcacggggattacgtaggagagccaggacaccgttaactagaagagcgaaactcttgaaacgctccgctggttggtcgacatactcatggga |
8339154 |
T |
|
| Q |
219 |
gtcatcggagaagtgaagaacggagagatgctgccagaggtggcgccaccggctagaaaggcgagcggtggaaactgaggtttttgtagggaggaatgag |
318 |
Q |
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| T |
8339153 |
gtcatcggagaagtgaagaacggagagatgctgccagaggtggcgccaccggctagaaagtcgagcggtggaaactgaggtttttgtagggaggaatgaa |
8339054 |
T |
|
| Q |
319 |
aggatatggttcaaaacaccgtccggtaagtagctgattctgtcttcgttttcttcttcacccgttaccagttttcttcgtttggatgataccaccattg |
418 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8339053 |
aggatatggttcaaaacaccgtcgggtaagtagctgattctgtcttcgttttcttcttcacccgttaccagttttcttcgtttggatgataccaccattg |
8338954 |
T |
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| Q |
419 |
tttctgcttgcttagttttggatctgttttggtcgttgccggttttctcagcaaagctacttgttttcaggcaagctagtgagttaagtttctctcacag |
518 |
Q |
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| T |
8338953 |
tttctgcttgcttagttttggatctgttttggtcgttgccggtt---------------------ttcaggcaagctagtgagttaagtttctctcacag |
8338875 |
T |
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| Q |
519 |
actgtatctcccttaacaagagaaagagggaaaacaagctact-------------aagcttcttcaagagcagagtgagcagcccttacctt------t |
599 |
Q |
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| T |
8338874 |
acggtatctcccttaacaagagaaagagggaaaacaagctactaagcttcttcaagaagcttcttcaagagcagagtgagtagcccttacctttctatgt |
8338775 |
T |
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| Q |
600 |
ctataccttcttttttccatttcttactagtttttcgtgcc |
640 |
Q |
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| T |
8338774 |
ctataccttcttttttccatttcttactagtttttcgtgcc |
8338734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 17468264 - 17468207
Alignment:
| Q |
22 |
tgaaggtggggtccaatggcagcacgaacccaagtctctaccgaatattcacgaaact |
79 |
Q |
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||||| ||||| ||||||||||||||||||||| | || || |||||||||||||||| |
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| T |
17468264 |
tgaagatggggaccaatggcagcacgaacccaattatcaacagaatattcacgaaact |
17468207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 4453849 - 4453781
Alignment:
| Q |
117 |
cttctgaatggcacggggattacgtaggagagccaggacaacgttaactagaagagcgaaactcttgaa |
185 |
Q |
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| T |
4453849 |
cttccgaatggcgcggggattacggaggagagcaagcacaccattaactaaaagagcgaagctcctgaa |
4453781 |
T |
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