View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11301_low_1 (Length: 911)

Name: NF11301_low_1
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11301_low_1
NF11301_low_1
[»] chr5 (8 HSPs)
chr5 (19-585)||(18556783-18557366)
chr5 (648-895)||(18557429-18557676)
chr5 (670-805)||(42742367-42742504)
chr5 (670-808)||(2706973-2707114)
chr5 (648-805)||(35846986-35847148)
chr5 (707-804)||(25341649-25341747)
chr5 (704-808)||(29685774-29685879)
chr5 (709-805)||(39368815-39368912)
[»] chr6 (4 HSPs)
chr6 (19-360)||(24494868-24495209)
chr6 (648-895)||(12129110-12129357)
chr6 (444-532)||(12128584-12128672)
chr6 (705-800)||(7546465-7546561)
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-367)||(86326-86674)
[»] chr8 (10 HSPs)
chr8 (648-895)||(40531126-40531371)
chr8 (374-585)||(544595-544820)
chr8 (648-895)||(544290-544533)
chr8 (436-568)||(40530914-40531046)
chr8 (374-444)||(23426932-23427002)
chr8 (683-793)||(38387843-38387956)
chr8 (670-793)||(46269-46396)
chr8 (705-793)||(1579087-1579176)
chr8 (436-483)||(31180414-31180461)
chr8 (392-435)||(31180480-31180523)
[»] chr7 (8 HSPs)
chr7 (652-895)||(35206636-35206878)
chr7 (686-808)||(27993564-27993689)
chr7 (685-808)||(46262147-46262273)
chr7 (710-796)||(6003328-6003415)
chr7 (670-796)||(2570072-2570201)
chr7 (374-435)||(24931568-24931629)
chr7 (753-801)||(25153217-25153266)
chr7 (375-432)||(26231738-26231795)
[»] chr1 (10 HSPs)
chr1 (699-895)||(17891454-17891651)
chr1 (449-585)||(38564596-38564732)
chr1 (648-806)||(38564795-38564952)
chr1 (670-805)||(38709865-38710002)
chr1 (375-436)||(38564504-38564565)
chr1 (670-794)||(4391519-4391646)
chr1 (712-808)||(13987577-13987674)
chr1 (648-771)||(39908887-39909013)
chr1 (773-804)||(27031872-27031903)
chr1 (823-893)||(42919712-42919782)
[»] chr2 (12 HSPs)
chr2 (681-895)||(44888260-44888475)
chr2 (828-895)||(14328168-14328235)
chr2 (680-797)||(42048255-42048375)
chr2 (737-800)||(23665440-23665504)
chr2 (698-796)||(41958175-41958273)
chr2 (450-578)||(9561049-9561178)
chr2 (447-533)||(42048639-42048725)
chr2 (705-805)||(4162051-4162151)
chr2 (374-435)||(9561211-9561272)
chr2 (698-796)||(37128963-37129062)
chr2 (707-808)||(9560816-9560918)
chr2 (670-805)||(4397461-4397599)
[»] chr3 (15 HSPs)
chr3 (441-578)||(18973084-18973221)
chr3 (670-796)||(45181506-45181635)
chr3 (648-805)||(2782100-2782261)
chr3 (660-805)||(16284968-16285116)
chr3 (661-892)||(18983168-18983400)
chr3 (375-444)||(2786886-2786955)
chr3 (670-805)||(17324188-17324326)
chr3 (374-436)||(55129436-55129498)
chr3 (712-808)||(3968578-3968675)
chr3 (712-808)||(4000130-4000227)
chr3 (772-804)||(823467-823499)
chr3 (773-808)||(20710736-20710771)
chr3 (450-484)||(55129530-55129564)
chr3 (400-444)||(3968960-3969005)
chr3 (736-800)||(30127242-30127307)
[»] chr4 (7 HSPs)
chr4 (648-805)||(40813812-40813972)
chr4 (688-808)||(17416537-17416660)
chr4 (712-799)||(37707392-37707480)
chr4 (698-805)||(26500306-26500414)
chr4 (670-771)||(1799058-1799161)
chr4 (773-804)||(26474854-26474885)
chr4 (842-895)||(9763108-9763161)
[»] scaffold0224 (1 HSPs)
scaffold0224 (823-893)||(18549-18619)


Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 19 - 585
Target Start/End: Original strand, 18556783 - 18557366
Alignment:
Q  19 ttaaaagccttggtcctgtaactttaacacgcccccgcaagatagggttaccgtcatatacgcctatcttgaaacgaagatcttgatgacgttgcttaga 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18556783 ttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcatatacgcctatcttgaaacgaagatcttgatgacgttgcctaga 18556882  T
Q  119 cagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttttatttctgacatgatctctgacaaaatgaatatgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18556883 cagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttttatttctgacatgatctctgacaaaatgaatatct 18556982  T
Q  219 atggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaatagtgggtaaactaa 318  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18556983 atggcaatgtgcttcatgcgactatggaagaggggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaatagtgggtaaactaa 18557082  T
Q  319 catgaagttcagagagaagtgatgacaatcagagaacttctgtggatgctagaactttttggttacagttccgtctttctggtcgtccaagcttctgtgt 418  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18557083 catgaagttcagagagaagtgatgacaaccagagaacttctgcggatgctagaactttttggttacagttccgtctttctggtcgtccaagcttttgtgt 18557182  T
Q  419 gctttcccaacctcccc-----------------tcggcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgattt 501  Q
    |||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18557183 gctttcccaacctcccctcgtcgtcggtctttggtcggcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgattt 18557282  T
Q  502 gagatttttctcctccgcgaagaaagacggtatagtggtccagagggtggtgcttaaaaggtgttcggggcggtgctattggtg 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18557283 gagatttttctcctccgcgaagaaagacggtatagtggtccagagggtggcgcttaaaaggtgttcggggcggtgctattggtg 18557366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 648 - 895
Target Start/End: Original strand, 18557429 - 18557676
Alignment:
Q  648 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgc 747  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  18557429 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtgagttgaggggtgc 18557528  T
Q  748 cgttttgatttgtgtcgggagtctatgggccgatcacttttgattcgagatcgagagctagnnnnnnnaatgtaagttcttttcgactttttggtggctc 847  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       |||| |||||||||||||||||||||||||||    
T  18557529 cgttttgatttgtgtcgggagtctatgggccgatcacttttgattcgagatccagagctagtttttttaatgcaagttcttttcgactttttggtggctc 18557628  T
Q  848 ctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatg 895  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  18557629 ctccgacttatcggttgttgagtggtgggtgaatctgatcgtttgatg 18557676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 670 - 805
Target Start/End: Complemental strand, 42742504 - 42742367
Alignment:
Q  670 tttggcattgggatattggtgggccgagtttggg--caggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 767  Q
    |||||||| ||| |||||||||| | |||||  |  |||||| |||||||| ||||||||| |||||| ||| |||||||| |||||| |||||||||||    
T  42742504 tttggcatcgggttattggtgggtcaagtttttgaacaggtttaggtgtctgctctggtggttcgtgggttgtggggtgcctttttgacttgtgtcggga 42742405  T
Q  768 gtctatgggccgatcacttttgattcgagatcgagagc 805  Q
    ||||   || ||||| ||||||||||||| ||| ||||    
T  42742404 gtcttgtgggcgatcgcttttgattcgaggtcgggagc 42742367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 670 - 808
Target Start/End: Original strand, 2706973 - 2707114
Alignment:
Q  670 tttggcattgggatattggtgggccgagtt--tgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 767  Q
    ||||||||  || |||||||| ||||||||  ||| |||||||||||| || ||| ||||| |||||  |||||||||||  |  ||| |||||||||||    
T  2706973 tttggcatctggttattggtgtgccgagttcttggacaggttaaggtgcctgctccggtggttcgtgagttgaggggtgctttaatgacttgtgtcggga 2707072  T
Q  768 gtcta-tgggccgatcacttttgattcgagatcgagagctag 808  Q
    ||||| ||  |||||||||||||||||||| ||| |||||||    
T  2707073 gtctagtgaaccgatcacttttgattcgaggtcgggagctag 2707114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 805
Target Start/End: Original strand, 35846986 - 35847148
Alignment:
Q  648 ccaccttttctttgtcttcg-agtttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgagggg 744  Q
    |||||||||||||||||| | | |||||||| ||| |||||||||| | |||||  || || |||||||||||| ||||||||| | |||  |||| |||    
T  35846986 ccaccttttctttgtctttggattttggcatcgggttattggtgggtcaagtttttggacatgttaaggtgtctgctctggtggtttgtgagttgatggg 35847085  T
Q  745 tgcc-gttttgatttgtgtcgggag-tctatgggccgatcacttttgattcgagatcgagagc 805  Q
    ||||  |||||| |||||||||||| | | ||||||||||  |||||||||||| ||| ||||    
T  35847086 tgccttttttgacttgtgtcgggagttttgtgggccgatcgattttgattcgaggtcgggagc 35847148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 707 - 804
Target Start/End: Original strand, 25341649 - 25341747
Alignment:
Q  707 gttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcgagag 804  Q
    |||||||| ||| ||||||||  |||||  || ||||||||| |  |||| ||||||||||||||  |||||||||||||||||||| ||||| |||||    
T  25341649 gttaaggtttctgctctggtgcttcgtgagttcaggggtgccttgatgatgtgtgtcgggagtctggtgggccgatcacttttgatttgagattgagag 25341747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 704 - 808
Target Start/End: Original strand, 29685774 - 29685879
Alignment:
Q  704 caggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcgag 802  Q
    |||||||||| |||| ||||||||| |||||  |||||| || || |  |||  ||||||||||||||| |||| ||||||||||||||||||  ||| |    
T  29685774 caggttaaggggtctgctctggtggttcgtgagttgaggagtaccttaatgacctgtgtcgggagtctaatgggtcgatcacttttgattcgaagtcggg 29685873  T
Q  803 agctag 808  Q
    ||||||    
T  29685874 agctag 29685879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 709 - 805
Target Start/End: Original strand, 39368815 - 39368912
Alignment:
Q  709 taaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtc-tatgggccgatcacttttgattcgagatcgagagc 805  Q
    |||||||||| | ||||||| |||||  ||||| |||| | |||||| |||||||||||||| | |||||||| | ||||||||||||| ||| ||||    
T  39368815 taaggtgtcttccctggtggttcgtgagttgagaggtgtctttttgacttgtgtcgggagtcttgtgggccgaccgcttttgattcgaggtcgggagc 39368912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 24495209 - 24494868
Alignment:
Q  19 ttaaaagccttggtcctgtaactttaacacgcccccgcaagatagggttaccgtcatatacgcctatcttgaaacgaagatcttgatgacgttgcttaga 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  24495209 ttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttgcctaga 24495110  T
Q  119 cagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttttatttctgacatgatctctgacaaaatgaatatgt 218  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  24495109 cagaggtttggtgaggcaatctgatagatgatctatagtggaaacatgttgaacccgaatctttttatttctcacatgatctctgacaaaatgaatatct 24495010  T
Q  219 atggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaatagtgggtaaactaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  24495009 atggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccaagattgtcacagtagatggtaggaatagtgggtaaactga 24494910  T
Q  319 catgaagttcagagagaagtgatgacaatcagagaacttctg 360  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  24494909 catgaagttcagagagaagtgatgacaaccagagaacttctg 24494868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 648 - 895
Target Start/End: Original strand, 12129110 - 12129357
Alignment:
Q  648 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgc 747  Q
    |||||||||||  |||||||| |||||||| |||||| ||||||||||||||||| || ||| |||||||| |||||||||||||||  |||| ||||||    
T  12129110 ccaccttttctccgtcttcgaatttggcatcgggataatggtgggccgagtttggacaagtttaggtgtcttctctggtgggtcgtgagttgatgggtgc 12129209  T
Q  748 cgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagctagnnnnnnnaatgtaagttcttttcgac-tttttggtggc 845  Q
    | | || |||||||||  |||||| |||| |||||||||||||||||||||||| |  |||         ||| |||||||||| ||| ||||||||| |    
T  12129210 cttattaatttgtgtc-agagtctgatggtccgatcacttttgattcgagatcggggacta-ctttttttatgcaagttcttttagacttttttggtgac 12129307  T
Q  846 tcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatg 895  Q
    ||||| ||||||||||  ||||||||||||| || | |||||||||||||    
T  12129308 tcctctgacttatcggaagttgagtggtgggcgattctgatcgtttgatg 12129357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 444 - 532
Target Start/End: Original strand, 12128584 - 12128672
Alignment:
Q  444 gtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggt 532  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||| |||  | |||||||||||    
T  12128584 gtcctttaggtctgtaaagggccgtgcagttgtggtggatccagtctctggatgatttaagatttttctcttccatgtagaaagacggt 12128672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 705 - 800
Target Start/End: Complemental strand, 7546561 - 7546465
Alignment:
Q  705 aggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcg 800  Q
    |||||| ||||||| ||||||||| |||||  |||||||||||| |||| ||| |||| | ||||||  ||| ||||||||||||||||||||||||    
T  7546561 aggttatggtgtctgctctggtggttcgtgagttgaggggtgccttttttattggtgttgagagtctggtggaccgatcacttttgattcgagatcg 7546465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 86674 - 86326
Alignment:
Q  19 ttaaaagccttggtcctgtaactttaacacgcccccgcaagatagggttaccgtcatatacgcctatcttgaaacgaagatcttgatgacgttgcttaga 118  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  86674 ttaaaagccttggtcctgtaaccttaacacgcccctgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttgcctaga 86575  T
Q  119 cagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttttatttctgacatgatctctgacaaaatgaatatgt 218  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  86574 cagaggtttggtgaggcaatctgttagctgatctgtagtggaaacatgttgaacccgaatctttttatttctgacatgatctctaacaaaatgaatatct 86475  T
Q  219 atggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaatagtgggtaaactaa 318  Q
    |||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |    
T  86474 atggcagtatgcttcatgcgactatggaagacgggattgatagtgagatacgtggcaccgagattgtcacagtagatggtaggaatagttggtaaactga 86375  T
Q  319 catgaagttcagagagaagtgatgacaatcagagaacttctgtggatgc 367  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  86374 catgaagttcagagagaagtgatgacaaccagagaacttctgcggatgc 86326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 1e-56; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 648 - 895
Target Start/End: Original strand, 40531126 - 40531371
Alignment:
Q  648 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgc 747  Q
    ||||||||||| |||||| ||||||| |||| |||||| ||| | | |||||||| ||||||||||||||| |||||||||||| ||  |||||||||||    
T  40531126 ccaccttttctctgtctttgagtttgacattaggatatcggtagactgagtttggacaggttaaggtgtctgctctggtgggtcttgagttgaggggtgc 40531225  T
Q  748 cgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagctagnnnnnnnaatgtaagttcttttcgactttttggtggct 846  Q
    ||||||||||||||||   ||||| ||||||||||||||||||||||||||||| |||||||         || ||||||||| || |||||||||||||    
T  40531226 cgttttgatttgtgtc--aagtctgatgggccgatcacttttgattcgagatcgggagctagttttttg-gtgcaagttctttccggctttttggtggct 40531322  T
Q  847 cctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatg 895  Q
    |||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  40531323 cctctgacttatcggttgttgagtggtgggtgaatctgatcgtgtgatg 40531371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 374 - 585
Target Start/End: Complemental strand, 544820 - 544595
Alignment:
Q  374 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccctcg-----------------gcgtcgtcctttaggtct 456  Q
    ||||||||||  ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||                 ||||||||||||||||||    
T  544820 tttttggttattgttccttctttctggtcgtccaagcttctttgtgctttcccaacctctcctcgtcgtcggtctttggttggcgtcgtcctttaggtct 544721  T
Q  457 gtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagtggtccagagggtggtgctt 556  Q
     |||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||     
T  544720 ataaagggtcgtgcagttgtggtggatc---tctctggatgatttgagatttttctcctctgcgaagaaagacggtatagtggtccagagggtggcgctg 544624  T
Q  557 aaaaggtgttcggggcggtgctattggtg 585  Q
    | ||||||||| |||||||||||||||||    
T  544623 ataaggtgttcagggcggtgctattggtg 544595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 648 - 895
Target Start/End: Complemental strand, 544533 - 544290
Alignment:
Q  648 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgc 747  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||| ||||||||| | |||  |||| || |||    
T  544533 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttt------ttaaggtgtctgctctggtggattgtgagttgacggatgc 544440  T
Q  748 cgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcgagagctagnnnnnnna-atgtaagttcttttcgactttttggtggc 845  Q
    ||||||||||||||||||||||||  |||| |||||||||| ||||||||||||  ||||||         ||| |||||||||||| |||||| |||||    
T  544439 cgttttgatttgtgtcgggagtctggtgggtcgatcactttagattcgagatcggaagctagtttttttttatgcaagttcttttcggcttttttgtggc 544340  T
Q  846 tcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatg 895  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||||||    
T  544339 tcctccaactcatcggttgttgagtggtgggtgaatctgatcgtttgatg 544290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 436 - 568
Target Start/End: Original strand, 40530914 - 40531046
Alignment:
Q  436 tcggcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtata 535  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||||| |    
T  40530914 tcggcggcgtcctttaggtctgcaaagggtcgtgcagttgtggtggatccagtccctggatgatttgagatttttctccttcgcgaagaaagacggtaca 40531013  T
Q  536 gtggtccagagggtggtgcttaaaaggtgttcg 568  Q
     |||||||||||||||  || ||||||||||||    
T  40531014 ttggtccagagggtggcactgaaaaggtgttcg 40531046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 374 - 444
Target Start/End: Original strand, 23426932 - 23427002
Alignment:
Q  374 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccctcggcgtcg 444  Q
    ||||||||||  ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  23426932 tttttggttattgttccttctttctggtcgtccaagcttctgtgcgctttcccaacctctcctcgtcgtcg 23427002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 683 - 793
Target Start/End: Original strand, 38387843 - 38387956
Alignment:
Q  683 tattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtc-tatgggccg 779  Q
    |||||||||| |||||||  || ||||||||||||| | ||||||||| |||||  |||||||||||| |||||| || ||||||||||| | ||||||     
T  38387843 tattggtgggtcgagtttttggacaggttaaggtgtttgctctggtggttcgtgagttgaggggtgcctttttgacttatgtcgggagtcttgtgggcca 38387942  T
Q  780 atcacttttgattc 793  Q
    ||||||||||||||    
T  38387943 atcacttttgattc 38387956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 670 - 793
Target Start/End: Complemental strand, 46396 - 46269
Alignment:
Q  670 tttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggt-cgtggattgaggggtgccgttttgatttgtgtcggg 766  Q
    |||| ||| ||| |||||||||| |||||||  || |||||| | |||||| ||| ||||||| ||||  |||||||||||| |||||| ||||||||||    
T  46396 tttgacatcgggttattggtgggtcgagtttttggacaggtttatgtgtctgctccggtgggttcgtgagttgaggggtgcctttttgacttgtgtcggg 46297  T
Q  767 agtc-tatgggccgatcacttttgattc 793  Q
    |||| | |||||| ||| ||||||||||    
T  46296 agtcttgtgggccaatcgcttttgattc 46269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 705 - 793
Target Start/End: Original strand, 1579087 - 1579176
Alignment:
Q  705 aggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattc 793  Q
    ||||| |||||||| ||||||||| |||||  ||||||| ||||  ||| | |||||| ||||||||  |||||||||||||||||||||    
T  1579087 aggtttaggtgtctgctctggtggttcgtgagttgagggatgcctcttttacttgtgttgggagtcttgtgggccgatcacttttgattc 1579176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 483
Target Start/End: Complemental strand, 31180461 - 31180414
Alignment:
Q  436 tcggcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggat 483  Q
    |||||| ||| ||| ||||||| |||||||||||||||||||||||||    
T  31180461 tcggcggcgttcttaaggtctgcaaagggtcgtgcagttgtggtggat 31180414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 435
Target Start/End: Complemental strand, 31180523 - 31180480
Alignment:
Q  392 tctttctggtcgtccaagcttctgtgtgctttcccaacctcccc 435  Q
    ||||| |||||||||||||||||||| ||||||| |||||||||    
T  31180523 tctttatggtcgtccaagcttctgtgcgctttccaaacctcccc 31180480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 4e-53; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 652 - 895
Target Start/End: Complemental strand, 35206878 - 35206636
Alignment:
Q  652 cttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgtt 751  Q
    ||||||| |||||| |||||||||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||| ||  ||||||||| || ||    
T  35206878 cttttctctgtctttgagtttggcattgggatattggtgggccgaatttggacaagttaaggtgtctgctctggtgggtcatgagttgaggggtcccttt 35206779  T
Q  752 ttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagctagnnnnnnnaatgtaagttcttttcgactttttggtggctcctc 850  Q
    || |||||||| ||||||||  ||||||||||||||||||| |||||||| |||||||       |||| |||||||||||| | ||||||||||||||     
T  35206778 tttatttgtgttgggagtctggtgggccgatcacttttgatccgagatcgggagctag-ttttttaatgcaagttcttttcggc-ttttggtggctcctt 35206681  T
Q  851 cgacttatcggttgttgagtggtgggtgaatatgatcgtttgatg 895  Q
    ||||||||| || ||| |||||||||||||| ||||| |||||||    
T  35206680 cgacttatcagtagtttagtggtgggtgaatctgatcctttgatg 35206636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 686 - 808
Target Start/End: Complemental strand, 27993689 - 27993564
Alignment:
Q  686 tggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatc 782  Q
    |||||||||||||||  ||  |||||| ||||| | ||||||||| |||||  |||||||||| | || |||||||||||||||||||  ||| ||||||    
T  27993689 tggtgggccgagtttttggataggttatggtgtttgctctggtggttcgtgagttgaggggtgtctttatgatttgtgtcgggagtctggtggaccgatc 27993590  T
Q  783 acttttgattcgagatcgagagctag 808  Q
    |||||||||||||||||| |||||||    
T  27993589 acttttgattcgagatcgggagctag 27993564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 685 - 808
Target Start/End: Complemental strand, 46262273 - 46262147
Alignment:
Q  685 ttggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgat 781  Q
    ||||||||||||||||  ||  || ||| ||||||| ||| ||||  |||||  |||||||||||| |||||||| |||| ||||||||  |||||||||    
T  46262273 ttggtgggccgagtttttggatagtttatggtgtcttctccggtgattcgtgagttgaggggtgcctttttgattggtgttgggagtctggtgggccgat 46262174  T
Q  782 cacttttgattcgagatcgagagctag 808  Q
    ||||||||||||||||||| |||||||    
T  46262173 cacttttgattcgagatcgggagctag 46262147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 710 - 796
Target Start/End: Original strand, 6003328 - 6003415
Alignment:
Q  710 aaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtc-tatgggccgatcacttttgattcgag 796  Q
    ||||||||| ||| ||||| | ||| |||||| | |||| |||||||||||||| |||||| |||||||||||| |||||||||||||    
T  6003328 aaggtgtctgctccggtggtttgtgaattgagtgatgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgag 6003415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 670 - 796
Target Start/End: Original strand, 2570072 - 2570201
Alignment:
Q  670 tttggcattgggatattggtgggccgag--tttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 767  Q
    |||||||| ||| |||||||||| ||||  ||||| ||| ||||||||| | ||||||| | |||||  |||||||||||| |||||| ||||||| |||    
T  2570072 tttggcatcgggttattggtgggtcgaggttttggtcagattaaggtgtttgctctggttgctcgtgagttgaggggtgcctttttgacttgtgtcagga 2570171  T
Q  768 gtct-atgggccgatcacttttgattcgag 796  Q
    ||||  |||||  ||| |||||||||||||    
T  2570172 gtctggtgggcttatcgcttttgattcgag 2570201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 374 - 435
Target Start/End: Original strand, 24931568 - 24931629
Alignment:
Q  374 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccc 435  Q
    ||||||||||| ||||  |||| || |||||||||||||||||| |||||||||||||||||    
T  24931568 tttttggttactgttctttcttcctagtcgtccaagcttctgtgcgctttcccaacctcccc 24931629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 753 - 801
Target Start/End: Original strand, 25153217 - 25153266
Alignment:
Q  753 tgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcga 801  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||||    
T  25153217 tgatttgtgtcgggagtctggtggaccgatcacttttgattcgagatcga 25153266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 432
Target Start/End: Original strand, 26231738 - 26231795
Alignment:
Q  375 ttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctc 432  Q
    |||||||||  ||||| ||||||||| |||||||||| ||| | ||||||||||||||    
T  26231738 ttttggttattgttccttctttctgggcgtccaagctgctgcgcgctttcccaacctc 26231795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 699 - 895
Target Start/End: Original strand, 17891454 - 17891651
Alignment:
Q  699 ttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgaga 797  Q
    |||||||||||||||||||| ||||| ||| |||||  |||||||||||||| | ||| ||||| |||||||| |||| |||||||||||||||||||||    
T  17891454 ttgggcaggttaaggtgtcttctctgatggatcgtgagttgaggggtgccgtgtagatgtgtgttgggagtctgatggaccgatcacttttgattcgaga 17891553  T
Q  798 tcgagagctagnnnnnnnaatgtaagttcttttcgactttttggtggctcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatg 895  Q
    | | |||| ||        ||| |||||||||||  |||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||    
T  17891554 ttgggagcaagttttctttatgcaagttcttttcagctttttggtggctcctccgatttatcggttgttgagtggtgtgtgaatttgatcgtttgatg 17891651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 449 - 585
Target Start/End: Original strand, 38564596 - 38564732
Alignment:
Q  449 ttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagtggtccagaggg 548  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |||| ||  | | |||| |||||    
T  38564596 ttaggtctgcaaagggtcgtgcagttgtggtggatccagtctctggatgatttgagatttttctcctccacgaagatagacagttcaatagtccggaggg 38564695  T
Q  549 tggtgcttaaaaggtgttcggggcggtgctattggtg 585  Q
    ||| | | |||||||||| ||||||||||| ||||||    
T  38564696 tggcgttgaaaaggtgtttggggcggtgcttttggtg 38564732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 648 - 806
Target Start/End: Original strand, 38564795 - 38564952
Alignment:
Q  648 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgc 747  Q
    |||||| ||||  |||||||| ||||||||  |||| ||||||||| |||||||| |||||| |||||| | ||| | |||||||||  |||||||||||    
T  38564795 ccacctgttctccgtcttcgaatttggcatcaggattttggtgggc-gagtttggacaggtttaggtgtttgctcagatgggtcgtgagttgaggggtgc 38564893  T
Q  748 cgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcgagagct 806  Q
    | |||||||||||||  |||||||  |||||||||| ||||||||||||||||| |||||    
T  38564894 c-ttttgatttgtgttaggagtctcgtgggccgatcgcttttgattcgagatcgggagct 38564952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 670 - 805
Target Start/End: Original strand, 38709865 - 38710002
Alignment:
Q  670 tttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 767  Q
    |||||||| ||| |||||||||| |||||||  || ||||||||||||| |  |||||||| |||||  |||||||||||| |||||  |||| ||||||    
T  38709865 tttggcatcgggttattggtgggtcgagtttttggacaggttaaggtgtttgttctggtggttcgtgagttgaggggtgcctttttgccttgtttcggga 38709964  T
Q  768 gtctatgggccgatcacttttgattcgagatcgagagc 805  Q
    |||| ||||| |||| ||||||||||||| ||| ||||    
T  38709965 gtctttgggctgatcgcttttgattcgaggtcgggagc 38710002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 375 - 436
Target Start/End: Original strand, 38564504 - 38564565
Alignment:
Q  375 ttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccct 436  Q
    |||||||||| ||||| ||||| ||||||| |||||||||||| ||||||||||||||||||    
T  38564504 ttttggttactgttccttctttatggtcgtacaagcttctgtgcgctttcccaacctcccct 38564565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 670 - 794
Target Start/End: Original strand, 4391519 - 4391646
Alignment:
Q  670 tttggcattgggatattggtgggccgag--tttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 767  Q
    |||||||| ||| | |||||||| ||||  ||||| |||||||||||||||  |||||||| |||||  |||||||||||  |||||  |||||||||||    
T  4391519 tttggcatcgggttcttggtgggtcgaggttttggtcaggttaaggtgtctgttctggtggttcgtgagttgaggggtgcatttttgccttgtgtcggga 4391618  T
Q  768 gtc-tatgggccgatcacttttgattcg 794  Q
    ||| | |||||| ||| |||||||||||    
T  4391619 gtcttgtgggccaatcgcttttgattcg 4391646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 712 - 808
Target Start/End: Original strand, 13987577 - 13987674
Alignment:
Q  712 ggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagctag 808  Q
    ||||||| ||||||||| |||||  |||||||||||| |  ||||||||||||||| |||  |||||| ||| |||||| |||||||||| |||||||    
T  13987577 ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggaatctggtgggccaatcgcttttgcttcgagatcgggagctag 13987674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 771
Target Start/End: Complemental strand, 39909013 - 39908887
Alignment:
Q  648 ccaccttttctttgtcttcg-agtttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgagggg 744  Q
    ||||||||||| |||||| | | |||||||| ||| |||||||||  |||||||  || |||||| |||||| | ||||||||| |||||  ||||||||    
T  39909013 ccaccttttctctgtctttggattttggcatcgggttattggtggatcgagtttttggacaggtttaggtgtatgctctggtggttcgtgagttgagggg 39908914  T
Q  745 tgccgttttgatttgtgtcgggagtct 771  Q
    |||  |||||| |||||||| ||||||    
T  39908913 tgcttttttgacttgtgtcgtgagtct 39908887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 804
Target Start/End: Complemental strand, 27031903 - 27031872
Alignment:
Q  773 tgggccgatcacttttgattcgagatcgagag 804  Q
    ||||||||||||||||||||||||||||||||    
T  27031903 tgggccgatcacttttgattcgagatcgagag 27031872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 823 - 893
Target Start/End: Complemental strand, 42919782 - 42919712
Alignment:
Q  823 gttcttttcgactttttggtggctcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttga 893  Q
    |||||||| | ||| ||| || |||||||| |||||||| |||||||||||||| || | |||||||||||    
T  42919782 gttcttttaggcttgttgatgtctcctccggcttatcggatgttgagtggtgggcgactctgatcgtttga 42919712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 681 - 895
Target Start/End: Complemental strand, 44888475 - 44888260
Alignment:
Q  681 gatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccg 779  Q
    |||||||||||||||||||||| |||||| | |||||| |||||||||||||||  |||||||||||| | ||||||| |||||||||| |  |||||||    
T  44888475 gatattggtgggccgagtttggacaggtttacgtgtctgctctggtgggtcgtgagttgaggggtgccttattgatttatgtcgggagtttggtgggccg 44888376  T
Q  780 atcacttttgattcgagatcgagagctagnnnnnnnaatgtaagttcttttcgactttttggtggctcctccgacttatcggttgttgagtggtgggtga 879  Q
    |||| |||| ||||||||| | |||||||        | | ||||||| |  | ||||||||||||||||||||||||||||  |||||||| |||  ||    
T  44888375 atcattttttattcgagattgggagctagtttttttgacgcaagttctctcaggctttttggtggctcctccgacttatcggaagttgagtgttggacga 44888276  T
Q  880 atatgatcgtttgatg 895  Q
    ||||||||||||||||    
T  44888275 atatgatcgtttgatg 44888260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 828 - 895
Target Start/End: Original strand, 14328168 - 14328235
Alignment:
Q  828 tttcgactttttggtggctcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatg 895  Q
    ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14328168 tttcggctgttttgtggctcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatg 14328235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 680 - 797
Target Start/End: Complemental strand, 42048375 - 42048255
Alignment:
Q  680 ggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagt-ctatggg 776  Q
    ||||| |||||||||||||||  || || |||||||||||| ||||||||| |||||  ||||| |||||| | ||||||| |||||||||| | |||||    
T  42048375 ggataatggtgggccgagtttttggacatgttaaggtgtctgctctggtggttcgtgagttgagaggtgccttgttgatttctgtcgggagtccgatggg 42048276  T
Q  777 ccgatcacttttgattcgaga 797  Q
    | |||||||||||||||||||    
T  42048275 ctgatcacttttgattcgaga 42048255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 737 - 800
Target Start/End: Complemental strand, 23665504 - 23665440
Alignment:
Q  737 ttgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcg 800  Q
    |||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||||||    
T  23665504 ttgaggggtgccatttttatttgtatcgggagtctagtgggccgatcacttttgattcgagatcg 23665440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 698 - 796
Target Start/End: Original strand, 41958175 - 41958273
Alignment:
Q  698 tttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtctatgggccgatcacttttgattcgag 796  Q
    ||||| ||||||||||||||| ||||||||| | |||  |||| ||||||| |||||| ||||||| |||||||   |||||| |||||||||||||||    
T  41958175 tttggacaggttaaggtgtctgctctggtggtttgtgagttgaagggtgcctttttgacttgtgtcaggagtcttgtggccgaccacttttgattcgag 41958273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 450 - 578
Target Start/End: Complemental strand, 9561178 - 9561049
Alignment:
Q  450 taggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagt--ggtccagagg 547  Q
    |||||||| |||||||||||||||||||||||||||  |  || ||||  | |||  ||||||||||||||| | ||||||||| |||  ||||||||||    
T  9561178 taggtctgcaaagggtcgtgcagttgtggtggatcctgtacctggatgggtggag-gttttctcctccgcgacgtaagacggtacagtggggtccagagg 9561080  T
Q  548 gtggtgcttaaaaggtgttcggggcggtgct 578  Q
    |||| ||| ||| | |||||| |||||||||    
T  9561079 gtggcgctaaaacgatgttcgtggcggtgct 9561049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 447 - 533
Target Start/End: Complemental strand, 42048725 - 42048639
Alignment:
Q  447 ctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggta 533  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||| |||| || | | ||| |||||| ||||| |||||| ||||    
T  42048725 ctttaggtctgcaaagggtcttgcagttgtggtggatccagtctctggatggttggtggtttatctccttcgcgatgaaagatggta 42048639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 705 - 805
Target Start/End: Complemental strand, 4162151 - 4162051
Alignment:
Q  705 aggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcgaga 803  Q
    ||||| |||||| | ||||||||| ||| |  |||||||||||| |  |||||||||| ||||||||  |||||||||||||||||||||||||||| ||    
T  4162151 aggttgaggtgtatgctctggtggttcgagagttgaggggtgcc-tagtgatttgtgttgggagtctggtgggccgatcacttttgattcgagatcggga 4162053  T
Q  804 gc 805  Q
    ||    
T  4162052 gc 4162051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 9561272 - 9561211
Alignment:
Q  374 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccc 435  Q
    ||||||||||  ||||| |||| || |||||||||||||||||| |||||||||||||||||    
T  9561272 tttttggttattgttccttcttccttgtcgtccaagcttctgtgcgctttcccaacctcccc 9561211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 698 - 796
Target Start/End: Complemental strand, 37129062 - 37128963
Alignment:
Q  698 tttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgag 796  Q
    ||||| |||||| |||||||| ||||||||| |||||  ||||  |||||| |||||| ||||||  |||||||  |||||||||| |||||||||||||    
T  37129062 tttggacaggttcaggtgtctgctctggtggttcgtgagttgataggtgcctttttgacttgtgttaggagtcttgtgggccgatcgcttttgattcgag 37128963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 9560918 - 9560816
Alignment:
Q  707 gttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcgagagc 805  Q
    |||| ||||||| ||||||| | |||||  |||||||||||| |  ||||||||||||  ||| |  ||| |||||||||||||||||||||||| ||||    
T  9560918 gttatggtgtctgctctggtagttcgtgagttgaggggtgccttgatgatttgtgtcgaaagtttggtggaccgatcacttttgattcgagatcgggagc 9560819  T
Q  806 tag 808  Q
    |||    
T  9560818 tag 9560816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 805
Target Start/End: Complemental strand, 4397599 - 4397461
Alignment:
Q  670 tttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 767  Q
    |||||||| | | |||||||||| |||||||  || || ||| | |||||| || |||||| |||||  |||||||||||| |||||| || | ||||||    
T  4397599 tttggcatagagttattggtgggtcgagtttttggacaagtttatgtgtctgctatggtggttcgtgagttgaggggtgccattttgacttctctcggga 4397500  T
Q  768 gtc-tatgggccgatcacttttgattcgagatcgagagc 805  Q
    ||| | ||||| |||| ||||||||||||| ||| ||||    
T  4397499 gtcttgtgggctgatcgcttttgattcgaggtcgggagc 4397461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 7e-36; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 441 - 578
Target Start/End: Original strand, 18973084 - 18973221
Alignment:
Q  441 gtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagtggt 540  Q
    |||||||||||||| || |||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| | ||||    
T  18973084 gtcgtcctttaggtttgcaaagggtcgtgcagttgtggtggatccagtctttggatgatttgagatttttctcctccgcgaagaaagacggtacattggt 18973183  T
Q  541 ccagagggtggtgcttaaaaggtgttcggggcggtgct 578  Q
       | |||||| | | || |||||||||||||||||||    
T  18973184 gatgtgggtggcgttgaataggtgttcggggcggtgct 18973221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 670 - 796
Target Start/End: Original strand, 45181506 - 45181635
Alignment:
Q  670 tttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 767  Q
    |||||||||||| |||||||||| |||||||  || ||||||| ||||||| ||||||||| |||||  |||||||||||| |||||| || ||||||||    
T  45181506 tttggcattgggttattggtgggtcgagtttttggacaggttagggtgtctgctctggtggttcgtgagttgaggggtgcctttttgacttttgtcggga 45181605  T
Q  768 gtc-tatgggccgatcacttttgattcgag 796  Q
    ||| | |||||| ||| |||||||||||||    
T  45181606 gtcttgtgggccaatcgcttttgattcgag 45181635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 648 - 805
Target Start/End: Complemental strand, 2782261 - 2782100
Alignment:
Q  648 ccaccttttctttgtctt-cgagtttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgagggg 744  Q
    |||||||||||||| ||| ||| ||||||||   |||| |||||||||||||||  || ||||||||||||||| ||||||||| | |||  ||||||||    
T  2782261 ccaccttttctttggcttacgaatttggcatctagataatggtgggccgagtttttggacaggttaaggtgtctgctctggtggtttgtgagttgagggg 2782162  T
Q  745 tgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagc 805  Q
    |||| |  |||||||||||| ||||||  |||| |||||||||||||||  |||||| ||||    
T  2782161 tgccttaatgatttgtgtcgagagtctggtgggacgatcacttttgattttagatcgggagc 2782100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 660 - 805
Target Start/End: Original strand, 16284968 - 16285116
Alignment:
Q  660 tgtcttcgagtttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatt 757  Q
    |||||| || |||||||| | | |||||||||| |||||||  || ||||||||||||||| |||| |||| |||||  |||||||||||| |||||| |    
T  16284968 tgtctttgattttggcatcgagctattggtgggtcgagtttttggacaggttaaggtgtctgctcttgtggttcgtgagttgaggggtgcctttttgact 16285067  T
Q  758 tgtgtcgggagtc-tatgggccgatcacttttgattcgagatcgagagc 805  Q
     ||||| |||||| | |||||||||| ||||||||||||| ||| ||||    
T  16285068 agtgtctggagtcttgtgggccgatcgcttttgattcgaggtcgggagc 16285116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 661 - 892
Target Start/End: Original strand, 18983168 - 18983400
Alignment:
Q  661 gtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgt 760  Q
    |||||||| |||||||| |||||| ||||||||||||||||    |||| || ||| | ||||||||||| |||  ||||| |||||| | ||||| |||    
T  18983168 gtcttcgaatttggcatcgggataatggtgggccgagtttgtatgggtttagatgtgtgctctggtgggttgtgagttgagtggtgccttattgatctgt 18983267  T
Q  761 gtcgggagtct-atgggccgatcacttttgattcgagatcgagagctagnnnnnnnaatgtaagttcttttcgac-tttttggtggctcctccgacttat 858  Q
    |||| |||||| |||| ||||||| || ||||||||||||| |||||||       || | || ||||||| | | ||||||||||||||| ||||  ||    
T  18983268 gtcgagagtctgatggaccgatcaattatgattcgagatcg-gagctagtttttttaacgcaaattcttttaggcttttttggtggctccttcgacacat 18983366  T
Q  859 cggttgttgagtggtgggtgaatatgatcgtttg 892  Q
    |||  ||||||||||||| |||| | ||||||||    
T  18983367 cggaagttgagtggtgggcgaatcttatcgtttg 18983400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 375 - 444
Target Start/End: Complemental strand, 2786955 - 2786886
Alignment:
Q  375 ttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccctcggcgtcg 444  Q
    |||||||||| ||||| | | ||||| |||||||||||||||| |||||||||||||||||||| |||||    
T  2786955 ttttggttactgttccttttatctggccgtccaagcttctgtgcgctttcccaacctcccctcgtcgtcg 2786886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 670 - 805
Target Start/End: Complemental strand, 17324326 - 17324188
Alignment:
Q  670 tttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 767  Q
    |||| ||| ||| |||||||||| |||||||  ||  ||||| |||||||||||| ||||| |||||  |||||||||||| |||| | || ||||| ||    
T  17324326 tttgacatcgggttattggtgggtcgagtttttggataggtttaggtgtctactccggtggttcgtgagttgaggggtgccttttttacttatgtcgtga 17324227  T
Q  768 gtc-tatgggccgatcacttttgattcgagatcgagagc 805  Q
    ||| | |||||||||| ||||||||||||| ||| ||||    
T  17324226 gtcttgtgggccgatctcttttgattcgaggtcgggagc 17324188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 436
Target Start/End: Original strand, 55129436 - 55129498
Alignment:
Q  374 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccct 436  Q
    ||||||||||| ||||| ||||  | ||||||||||||||| || ||||||||||||||||||    
T  55129436 tttttggttactgttccttcttcttagtcgtccaagcttctatgcgctttcccaacctcccct 55129498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 808
Target Start/End: Complemental strand, 3968675 - 3968578
Alignment:
Q  712 ggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagctag 808  Q
    ||||||| ||||||||| |||||  |||||||||||| |  |||||||||||||||||||  ||| || ||| |||||| |||||||||  |||||||    
T  3968675 ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagatcaggagctag 3968578  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 808
Target Start/End: Original strand, 4000130 - 4000227
Alignment:
Q  712 ggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagctag 808  Q
    ||||||| ||||||||| |||||  |||||||||||| |  |||||||||||||||||||  ||| || ||| |||||| |||||||||  |||||||    
T  4000130 ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagatcaggagctag 4000227  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 804
Target Start/End: Complemental strand, 823499 - 823467
Alignment:
Q  772 atgggccgatcacttttgattcgagatcgagag 804  Q
    |||||||||||||||||||||||||||||||||    
T  823499 atgggccgatcacttttgattcgagatcgagag 823467  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 808
Target Start/End: Complemental strand, 20710771 - 20710736
Alignment:
Q  773 tgggccgatcacttttgattcgagatcgagagctag 808  Q
    |||||||||||||||||||||||||||| |||||||    
T  20710771 tgggccgatcacttttgattcgagatcgggagctag 20710736  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 450 - 484
Target Start/End: Original strand, 55129530 - 55129564
Alignment:
Q  450 taggtctgtaaagggtcgtgcagttgtggtggatc 484  Q
    |||||||| ||||||||||||||||||||||||||    
T  55129530 taggtctgcaaagggtcgtgcagttgtggtggatc 55129564  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 3969005 - 3968960
Alignment:
Q  400 gtcgtccaagcttctgtgtgctttcccaacctc-ccctcggcgtcg 444  Q
    |||||||||||||||||| |||||||||||||| |||||| |||||    
T  3969005 gtcgtccaagcttctgtgcgctttcccaacctctccctcgtcgtcg 3968960  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 800
Target Start/End: Original strand, 30127242 - 30127307
Alignment:
Q  736 attgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgagatcg 800  Q
    ||||||||||||  | ||||||||| ||||||||||  || ||||||| |||||||||||||||||    
T  30127242 attgaggggtgctctattgatttgtttcgggagtctggtgagccgatcgcttttgattcgagatcg 30127307  T

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Target: chr4 (Bit Score: 62; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 648 - 805
Target Start/End: Complemental strand, 40813972 - 40813812
Alignment:
Q  648 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggt 745  Q
    ||||||||||| || |||||| ||||||||  || |  |||||||||||||||  ||  |||||||||||||| |||| |||| ||||| ||||| ||||    
T  40813972 ccaccttttctctgccttcgaatttggcatctggtttatggtgggccgagtttttggataggttaaggtgtctgctctagtggttcgtgaattgaagggt 40813873  T
Q  746 gccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatcgagagc 805  Q
    ||| || ||||||| |||||||||||  |||||||||||||||||||||||||||| ||||    
T  40813872 gcctttatgatttgcgtcgggagtctggtgggccgatcacttttgattcgagatcgggagc 40813812  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 688 - 808
Target Start/End: Complemental strand, 17416660 - 17416537
Alignment:
Q  688 gtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcac 784  Q
    |||||||||||||  || |||||||||||||||||||| |||| |||||  ||||||||||||    ||||| |||||| ||| ||| ||||||||||||    
T  17416660 gtgggccgagtttttggacaggttaaggtgtctactctagtggttcgtgagttgaggggtgcctaaatgattggtgtcgagagcctagtgggccgatcac 17416561  T
Q  785 ttttgattcgagatcgagagctag 808  Q
    |||||||||||||||  |||||||    
T  17416560 ttttgattcgagatcaggagctag 17416537  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 712 - 799
Target Start/End: Complemental strand, 37707480 - 37707392
Alignment:
Q  712 ggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtct-atgggccgatcacttttgattcgagatc 799  Q
    ||||||| ||||||||| |||||  |||||||||||| ||||| | ||||||||||||||  |||||||||||||||||||||||||||    
T  37707480 ggtgtctgctctggtggttcgtgagttgaggggtgcctttttgctatgtgtcgggagtctggtgggccgatcacttttgattcgagatc 37707392  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 698 - 805
Target Start/End: Complemental strand, 26500414 - 26500306
Alignment:
Q  698 tttgggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcgggagtc-tatgggccgatcacttttgattcgag 796  Q
    ||||| ||||||||||||| | |||| |||| |||||  |||||||||||| |||||| ||||||||| |||| | |||| ||||| |||||||||||||    
T  26500414 tttggacaggttaaggtgtatgctctagtggttcgtgagttgaggggtgcctttttgacttgtgtcggaagtcttgtgggtcgatcgcttttgattcgag 26500315  T
Q  797 atcgagagc 805  Q
     ||| ||||    
T  26500314 gtcgggagc 26500306  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 670 - 771
Target Start/End: Original strand, 1799058 - 1799161
Alignment:
Q  670 tttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgggtcgtggattgaggggtgccgttttgatttgtgtcggga 767  Q
    |||||||| ||| |||||||||| |||||||  ||  |||||||||||||| ||| ||||| |||||  |||||||||||| |||||| ||||||  |||    
T  1799058 tttggcatcgggttattggtgggtcgagtttttggataggttaaggtgtctgctccggtggttcgtgagttgaggggtgcctttttgacttgtgtaagga 1799157  T
Q  768 gtct 771  Q
    ||||    
T  1799158 gtct 1799161  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 804
Target Start/End: Original strand, 26474854 - 26474885
Alignment:
Q  773 tgggccgatcacttttgattcgagatcgagag 804  Q
    ||||||||||||||||||||||||||||||||    
T  26474854 tgggccgatcacttttgattcgagatcgagag 26474885  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 842 - 895
Target Start/End: Original strand, 9763108 - 9763161
Alignment:
Q  842 tggctcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatg 895  Q
    |||||||||||||||||| |  |||||||||||||  ||| |||||||||||||    
T  9763108 tggctcctccgacttatcagaagttgagtggtgggcaaatctgatcgtttgatg 9763161  T

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Target: scaffold0224 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 823 - 893
Target Start/End: Original strand, 18549 - 18619
Alignment:
Q  823 gttcttttcgactttttggtggctcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttga 893  Q
    |||||||| | ||| ||| || |||||||| |||||||| |||||||||||||| || | |||||||||||    
T  18549 gttcttttaggcttgttgatgtctcctccggcttatcggatgttgagtggtgggcgactctgatcgtttga 18619  T

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