View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_10 (Length: 573)
Name: NF11301_low_10
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 48961725 - 48961179
Alignment:
| Q |
18 |
actacaatcaattcaaacactatcttcgaatcaaatattgcgaccatcaacatgttccttcacatggtagccttcaccaaatggcttctttgagagagaa |
117 |
Q |
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| T |
48961725 |
actacaatcaattcaaacactatcttcgaatcaaatattgcaaccatcaacattttccttcacatggtagccttcaccaaatggcttctttgagagagaa |
48961626 |
T |
|
| Q |
118 |
agacgcactcctggatcatgatgggagcaagaagcatgatacagtagagagttattgacacactgtacattgctgttcatgtatgcagccattggaattg |
217 |
Q |
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| T |
48961625 |
agacgcactcctggatcatgatgggagcaagaagcatgatacagtagagagttattgacacactgtacattgctgttcatgtatgcagccattggaattg |
48961526 |
T |
|
| Q |
218 |
aagattttgttcttcctttgttattcttatctttcttgtttatttttccttcatcagcacttgaactctcagattcaccaccatcaactttgattgtgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48961525 |
aagattttgttcttcctttgttattcttatctttcttgtttatttttccttcatcagcacttgaactctcagattcaccaccgtcaactttgattgtgtt |
48961426 |
T |
|
| Q |
318 |
ccccttcttgtgaagataattgggttggtgtttcttttgggattgaactagttccatataggctcctctgttttcccctgcaattgttatcactctcatg |
417 |
Q |
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| T |
48961425 |
ccccttcttgtgaagataattgggttggtgtttcttttgggattgaactagttccatataggctcctctgttttcccctgcaattgttatcactctcatg |
48961326 |
T |
|
| Q |
418 |
ccagagtcctcagaatctgaaaactttttctccttgctggattctcttcctttcacagtaatgtgttttccatgatgggaagaattgctgtgattttgag |
517 |
Q |
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| T |
48961325 |
ccagagtcctcagaatctgaaaactttttctccttgctggattctcttcctttcacagtaatgtgttttccatgatgggaagaattgctgtgattttgag |
48961226 |
T |
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| Q |
518 |
tctgcctatggaattcaccattgctgtgattttgattctccctatgc |
564 |
Q |
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| T |
48961225 |
tctgcctatggaattcaccattgctgtgattttgattctccctatgc |
48961179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 9486046 - 9485931
Alignment:
| Q |
85 |
tagccttcaccaaatggcttctttgagagagaaagacgcactcctggatcatgatgggagcaagaagcatgatacagtagagagttattgacacactgta |
184 |
Q |
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||||||| |||||||||||||||||| || | ||| |||| ||||||||||| |||| ||||||||||| | | | || ||||| |||||||| | |
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| T |
9486046 |
tagcctttaccaaatggcttctttgaaagtgtaagttgcacccctggatcatggtgggtacaagaagcatgtaataacaatgaattattcacacactgca |
9485947 |
T |
|
| Q |
185 |
cattgctgttcatgta |
200 |
Q |
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||||||| |||||||| |
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| T |
9485946 |
cattgctattcatgta |
9485931 |
T |
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Back To:
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