View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_12 (Length: 545)
Name: NF11301_low_12
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 539
Target Start/End: Complemental strand, 16179419 - 16178907
Alignment:
| Q |
14 |
caatatttgcacgggtaagttttcaaattcgaagagaagtttctctctttttgacgttgcgtaagagtcttttggtgtcctcctaaagcttgtgaagaat |
113 |
Q |
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| T |
16179419 |
caatatttgcacgggtaagttttcaaattcgaagagaagtttctctctttttgacgttgcgtatgagtcttttggtgtcctcctaaagcttgtggagaat |
16179320 |
T |
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| Q |
114 |
gaaattgtctcccacaatatttgcacgaccaagttttcgacttcaaagacttttctttagctttgattttatgttttagtttattgttagcccaacttaa |
213 |
Q |
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| T |
16179319 |
gaaattgtctcccacaatatttgcacgaccaagttttcgacttcgaagacttttctttagcttttattttatgtttgagtttattgttaggccaacttaa |
16179220 |
T |
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| Q |
214 |
cccagctccaatttctttgttgtgttgtaaaagtcacgttcttggattctagccccagtagtcggaatatccttgaagatcgatgaaattaatgtgggta |
313 |
Q |
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| T |
16179219 |
cccaactccaatttctttgttgggttgtaaaagtcacgttcttggattctagccccagtagtcggaatatccttgaagatcgatgaaattaatgtgggta |
16179120 |
T |
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| Q |
314 |
ctgtttaaagcttgttcagatttg-gaaattcaatttcctttattgtcaccaccttgttgttagtagaaataacaacttcatgtctagaccagtttgtta |
412 |
Q |
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| T |
16179119 |
ct------------ttcagatttgccaacttcattctcccttattgtcaccaccttgttataagtagaaaaaacaacttcatgtctagaccagtttgtta |
16179032 |
T |
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| Q |
413 |
cggaaatcactatttttctgacaagattttgagcgatacattaaggcgtaagctcctcatgaacataacgatatccgtaacgatatgcctctccttgcat |
512 |
Q |
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| T |
16179031 |
cggaaatcactatttttctgacaagattttgagcgatacattgaggcgta--ctcctcatgaacataaccatatccgtaaagacatgcctctccttgcat |
16178934 |
T |
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| Q |
513 |
ttgatcctctcataacattctcctcac |
539 |
Q |
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| T |
16178933 |
ttgatcctctcataacattctcctcac |
16178907 |
T |
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