View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11301_low_13 (Length: 532)
Name: NF11301_low_13
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 3 - 338
Target Start/End: Complemental strand, 16178607 - 16178273
Alignment:
| Q |
3 |
caaaagagagtgttgctaggtatggtctaatgttcatgaggagcttatacctaatctacttttcaaatttttgtcggaatataaatcgtgatttccataa |
102 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16178607 |
caaaagagagtattgctaggtatggtctaatgttcatgaggagcttatacctaatctacttttcaaatttttgtcggaatataaattgtgatttccataa |
16178508 |
T |
|
| Q |
103 |
caaaatgttcatacatatgnnnnnnnnnncctcttttgtttataacaacaacaaggtggtaaagatgaaggagaaggaagttgcaaaatcttaacaagct |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16178507 |
caaaatgttcatacatatgttttttttt-cctcttttgtttataacaacaacaaggtggtaaagatgaaggagaaggaagttgcaaaatcttaacaagct |
16178409 |
T |
|
| Q |
203 |
tcaaactttacccacgttgatttcatcaacctctccagggatgttttgattccttggtccaggatgcaagaatattactatttccaccaacaaagaaatt |
302 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16178408 |
tcaaactttacccacgttgatttcatcgacctctccagggatgttttgatcccctggtccaggatgcaagaatattactatttccaccaacaaagaaatt |
16178309 |
T |
|
| Q |
303 |
ggatgtgggttcatctcgctaagttgagctaataac |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
16178308 |
ggatgtgggttcatctcgctaagttgagctaataac |
16178273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 388 - 517
Target Start/End: Complemental strand, 16178223 - 16178094
Alignment:
| Q |
388 |
cttacccatattgtgatagacattttcgttctcaacaatgctttaggaggtcatcaaaaggctcaaacgcatgagcgtgaagcagagagaaacttttctt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16178223 |
cttacccatattgtgatagacattttcgttctcaacaatgctttaggaggtcatcaaaaggctcaaacgcatgagcgtgaagcagagagaaacttttctt |
16178124 |
T |
|
| Q |
488 |
ggaagtcgaaaacttacttatgcaaatatt |
517 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
16178123 |
ggaagtcgaaaacttactcgtgcaaatatt |
16178094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University