View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11301_low_14 (Length: 469)

Name: NF11301_low_14
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11301_low_14
NF11301_low_14
[»] chr6 (8 HSPs)
chr6 (2-454)||(29476410-29476850)
chr6 (166-244)||(28141105-28141183)
chr6 (178-267)||(29827568-29827657)
chr6 (179-256)||(29469786-29469863)
chr6 (179-256)||(29673540-29673617)
chr6 (160-244)||(28186964-28187048)
chr6 (160-244)||(28296274-28296358)
chr6 (160-244)||(28515715-28515799)
[»] scaffold0012 (1 HSPs)
scaffold0012 (179-256)||(211652-211729)
[»] scaffold0019 (1 HSPs)
scaffold0019 (160-244)||(56828-56912)
[»] chr8 (1 HSPs)
chr8 (160-222)||(35984860-35984922)
[»] chr5 (1 HSPs)
chr5 (8-40)||(13717603-13717635)


Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 2 - 454
Target Start/End: Complemental strand, 29476850 - 29476410
Alignment:
Q  2 aacatatttcttgacattacttgttgcttcaaaggatatgccttggcagacgtcgagcatatactttgtgctcgttatggccacgatttaaaatatcata 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||  | ||||||||||    
T  29476850 aacatatttcttgacattacttgttgcttcaaaggatatgccttggcagacgtcgagcagttactttgtgctcgttatggccacgacatgaaatatcata 29476751  T
Q  102 ttaaagtgttgattgacaagtcactcataaatattttagatggtaaggtgaccacaacacatcccttgatagagagcatgggtaaagaaattgttcgtga 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29476750 ttaaagtgttgattgacaagtcactcataaatattttagatggtaaggtgacaacaacacatcccttgatagagagcatgggtaaagaaattgttcgtga 29476651  T
Q  202 ggaatcaccagaagatcctgggagacgtagtagattatggttctctgaagatatagttgaagtcttgaaaaataataaggtaaggttgttacaggtgatt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29476650 ggaatcaccagaagatcctgggagacgtagtagattatggttctctgaagatatagttgaagtcttgaaaaataataaggtaaggttgttacaggtgatt 29476551  T
Q  302 catattttttctctaactgttgtcgatttgttttctctcttatatactcatgttacannnnnnnnnnnnnnnnnnnnnaccattttaaatagctaaatat 401  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||                      ||||||||||||||||||||||    
T  29476550 catattttttctctaactgttgtcgatttgtttt--ctcttatatactcatgttac----------gtttttttttttaccattttaaatagctaaatat 29476463  T
Q  402 cttccaaatattaatattgaagtcttacatttatgcgtgtactgttttgatct 454  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  29476462 cttccaaatattaacattgaagtcttacatttatgcgtgcactgttttgatct 29476410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 28141105 - 28141183
Alignment:
Q  166 cttgatagagagcatgggtaaagaaattgttcgtgaggaatcaccagaagatcctgggagacgtagtagattatggttc 244  Q
    ||||||||||   ||||||||||||||||||||  | ||||||||| |||| ||||||| ||| |||||||||||||||    
T  28141105 cttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttc 28141183  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 29827568 - 29827657
Alignment:
Q  178 catgggtaaagaaattgttcgtgaggaatcaccagaagatcctgggagacgtagtagattatggttctctgaagatatagttgaagtctt 267  Q
    |||||||||||||||||| ||  | ||||||||  |||| ||||| |  |||||||| || ||||||| ||||||||||||| |||||||    
T  29827568 catgggtaaagaaattgtacgacaagaatcaccgaaagagcctggaaagcgtagtaggttgtggttctatgaagatatagttcaagtctt 29827657  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 29469786 - 29469863
Alignment:
Q  179 atgggtaaagaaattgttcgtgaggaatcaccagaagatcctgggagacgtagtagattatggttctctgaagatata 256  Q
    ||||| |||||||||||| |  | |||||||| ||||||||||| | ||| ||||| ||||||| |||| ||||||||    
T  29469786 atggggaaagaaattgttagacaagaatcacctgaagatcctggaaaacgcagtaggttatggtcctctaaagatata 29469863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 29673617 - 29673540
Alignment:
Q  179 atgggtaaagaaattgttcgtgaggaatcaccagaagatcctgggagacgtagtagattatggttctctgaagatata 256  Q
    ||||| |||||||||||| |  | ||| |||| ||||||||||| | ||||||||| |||||||| || |||||||||    
T  29673617 atgggaaaagaaattgttagacaagaagcacctgaagatcctggaaaacgtagtaggttatggttttccgaagatata 29673540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 28186964 - 28187048
Alignment:
Q  160 acatcccttgatagagagcatgggtaaagaaattgttcgtgaggaatcaccagaagatcctgggagacgtagtagattatggttc 244  Q
    |||| ||||||||||||  ||||||||||||||||| ||  | || || ||| |||| ||||| ||||||||||| || ||||||    
T  28186964 acatgccttgatagagaaaatgggtaaagaaattgtccggaaagagtctccaaaagagcctggaagacgtagtaggttgtggttc 28187048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 28296358 - 28296274
Alignment:
Q  160 acatcccttgatagagagcatgggtaaagaaattgttcgtgaggaatcaccagaagatcctgggagacgtagtagattatggttc 244  Q
    |||| ||||||||||||  ||||||||||||||||| | |||  |||| ||| |||| || || ||||||||||| || ||||||    
T  28296358 acatgccttgatagagaaaatgggtaaagaaattgtgcatgaaaaatctccaaaagagccaggaagacgtagtaggttgtggttc 28296274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 28515715 - 28515799
Alignment:
Q  160 acatcccttgatagagagcatgggtaaagaaattgttcgtgaggaatcaccagaagatcctgggagacgtagtagattatggttc 244  Q
    |||| ||||||||||||  ||||||||||||||||| | |||  |||| ||| |||| || || ||||||||||| || ||||||    
T  28515715 acatgccttgatagagaaaatgggtaaagaaattgtgcatgaaaaatctccaaaagagccaggaagacgtagtaggttgtggttc 28515799  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 211729 - 211652
Alignment:
Q  179 atgggtaaagaaattgttcgtgaggaatcaccagaagatcctgggagacgtagtagattatggttctctgaagatata 256  Q
    ||||| |||||||||||| |  | |||||||| ||| ||||||| | ||| |||||||||||||||||||||||||||    
T  211729 atggggaaagaaattgttagacaagaatcacctgaaaatcctggaaaacgcagtagattatggttctctgaagatata 211652  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 56912 - 56828
Alignment:
Q  160 acatcccttgatagagagcatgggtaaagaaattgttcgtgaggaatcaccagaagatcctgggagacgtagtagattatggttc 244  Q
    |||| ||||||||||||  ||||||||||||||||| ||  | || || ||| |||| ||||| ||||||||||| |||||||||    
T  56912 acatgccttgatagagaaaatgggtaaagaaattgtccgcaaagagtctccaaaagagcctggaagacgtagtaggttatggttc 56828  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 35984860 - 35984922
Alignment:
Q  160 acatcccttgatagagagcatgggtaaagaaattgttcgtgaggaatcaccagaagatcctgg 222  Q
    |||| |||||||||||  ||||||||| |||||||||||   ||||||||||||||| |||||    
T  35984860 acatgccttgatagaggacatgggtaaggaaattgttcgactggaatcaccagaagaacctgg 35984922  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 13717603 - 13717635
Alignment:
Q  8 tttcttgacattacttgttgcttcaaaggatat 40  Q
    |||||||||||| ||||||||||||||||||||    
T  13717603 tttcttgacattgcttgttgcttcaaaggatat 13717635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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