View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11301_low_16 (Length: 447)

Name: NF11301_low_16
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11301_low_16
NF11301_low_16
[»] chr8 (10 HSPs)
chr8 (14-431)||(7533486-7533900)
chr8 (281-431)||(32927845-32927995)
chr8 (286-431)||(37684363-37684508)
chr8 (284-431)||(26100128-26100276)
chr8 (286-318)||(12742244-12742276)
chr8 (221-279)||(10367890-10367948)
chr8 (358-431)||(40848046-40848120)
chr8 (327-431)||(6027031-6027136)
chr8 (327-411)||(13384656-13384741)
chr8 (392-431)||(9461520-9461560)
[»] chr4 (12 HSPs)
chr4 (231-431)||(35064962-35065166)
chr4 (283-432)||(32818351-32818500)
chr4 (235-318)||(46344926-46345013)
chr4 (282-322)||(25319001-25319041)
chr4 (355-421)||(45011900-45011967)
chr4 (282-318)||(33560666-33560702)
chr4 (227-315)||(49138933-49139025)
chr4 (221-279)||(2326949-2327007)
chr4 (284-322)||(43868092-43868130)
chr4 (333-421)||(16643982-16644070)
chr4 (359-431)||(34759470-34759542)
chr4 (227-275)||(45329741-45329789)
[»] chr6 (12 HSPs)
chr6 (227-417)||(5724626-5724820)
chr6 (355-421)||(17225878-17225945)
chr6 (221-429)||(4910797-4911009)
chr6 (283-317)||(957701-957735)
chr6 (284-318)||(2008597-2008631)
chr6 (282-411)||(26280559-26280688)
chr6 (281-322)||(2008429-2008470)
chr6 (282-315)||(18690626-18690659)
chr6 (281-318)||(24982428-24982465)
chr6 (284-320)||(7280446-7280482)
chr6 (227-279)||(24974110-24974162)
chr6 (282-318)||(35098553-35098589)
[»] chr1 (8 HSPs)
chr1 (227-384)||(28083918-28084078)
chr1 (220-301)||(45660861-45660945)
chr1 (250-380)||(47892422-47892555)
chr1 (355-421)||(11049276-11049343)
chr1 (359-431)||(30557534-30557605)
chr1 (355-431)||(7524139-7524216)
chr1 (282-318)||(646134-646170)
chr1 (227-279)||(15478139-15478191)
[»] chr3 (12 HSPs)
chr3 (227-322)||(1441472-1441571)
chr3 (355-431)||(31708221-31708298)
chr3 (227-279)||(25359711-25359763)
chr3 (227-275)||(52363960-52364008)
chr3 (250-318)||(12674931-12675003)
chr3 (281-384)||(44771647-44771749)
chr3 (287-384)||(32523370-32523467)
chr3 (227-380)||(35058255-35058412)
chr3 (281-318)||(48410907-48410944)
chr3 (231-279)||(3776438-3776486)
chr3 (227-279)||(3845250-3845302)
chr3 (227-279)||(51285454-51285506)
[»] chr2 (12 HSPs)
chr2 (358-431)||(32596020-32596094)
chr2 (221-279)||(7629751-7629809)
chr2 (282-318)||(7630370-7630406)
chr2 (335-383)||(37745906-37745954)
chr2 (227-374)||(6327109-6327254)
chr2 (281-315)||(43501096-43501130)
chr2 (221-315)||(33047650-33047748)
chr2 (327-384)||(42740975-42741032)
chr2 (231-279)||(680421-680469)
chr2 (358-429)||(8800682-8800754)
chr2 (284-380)||(12037017-12037112)
chr2 (282-318)||(32777924-32777960)
[»] chr7 (7 HSPs)
chr7 (281-315)||(17111828-17111862)
chr7 (284-427)||(40491534-40491677)
chr7 (229-279)||(38123786-38123836)
chr7 (282-318)||(12306688-12306724)
chr7 (282-318)||(12306931-12306967)
chr7 (278-318)||(15903643-15903683)
chr7 (282-318)||(45004974-45005010)
[»] chr5 (7 HSPs)
chr5 (227-275)||(9449358-9449406)
chr5 (227-278)||(10859960-10860011)
chr5 (284-383)||(43310571-43310669)
chr5 (227-260)||(15368138-15368171)
chr5 (282-318)||(10898676-10898712)
chr5 (282-322)||(29922848-29922888)
chr5 (227-279)||(38845649-38845701)
[»] scaffold0168 (1 HSPs)
scaffold0168 (227-315)||(31721-31813)
[»] scaffold0276 (1 HSPs)
scaffold0276 (358-387)||(2654-2683)


Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 431
Target Start/End: Original strand, 7533486 - 7533900
Alignment:
Q  14 aggatgacaaaatttatgtagcaaagattaagatatttgacaagttgaagtttgaattttacaaattagttctgtatatatgataataatagattggacc 113  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  7533486 aggatgacaaaatttatgtggcaaagattaagatatttgacaagttgaagtttgaattttacaaattagttctgtatatatgataa---tagattggacc 7533582  T
Q  114 gctttgttacccagttcgaatatacgatcggttcttatctaaactaatcaaattgaaacagaccaatcatgtgtaaaatttgtcctatgtgcacaccata 213  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7533583 gcttcgttacccagttcgaatatacgatcggttcttatctaaactaatcaaattgaaacaaaccaatcatgtgtaaaatttgtcctatgtgcacaccata 7533682  T
Q  214 tgttggcttagtatatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaatcctgacatgtttggttgctttcgagtagaattga 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  7533683 tgttggcttagtatatgtttggttccacttttggaggggccaaaattaattctggaggtgtagaatcctgacatgtttggttgctttcaagtagaattga 7533782  T
Q  314 ttttgtctcgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgatttttacatacgaacttataattaactcacttttata 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7533783 ttttgtctcgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgatttttacatacgaacttataattaactcacttttata 7533882  T
Q  414 tgaatgtacccaaacaca 431  Q
    ||||||||||||||||||    
T  7533883 tgaatgtacccaaacaca 7533900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 281 - 431
Target Start/End: Original strand, 32927845 - 32927995
Alignment:
Q  281 ctgacatgtttggttgctttcgagtagaattgattttgtctcgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgatttt 380  Q
    ||||||||||||||||||||| |||||||||||||||| |||    | ||| |||||||| ||| ||   ||| |||||||||||| || |||| |||||    
T  32927845 ctgacatgtttggttgctttccagtagaattgattttgcctc-aatagttgattctacttgaagctaggatttgtagcttttgattatagaattcatttt 32927943  T
Q  381 tacatacgaacttataatt-aactcacttttatatgaatgtacccaaacaca 431  Q
    |||| || || ||||| || |||||||||||| ||||||||| |||||||||    
T  32927944 tacacacaaatttatagttcaactcacttttacatgaatgtatccaaacaca 32927995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 286 - 431
Target Start/End: Original strand, 37684363 - 37684508
Alignment:
Q  286 atgtttggttgctttcgagtagaattgattttgtctcgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgatttttacat 385  Q
    ||||||||||| | | |||||||||||||||||||||   |||||| |||||||| ||| ||   ||| | |||||||||||||||||||||||| |       
T  37684363 atgtttggttgttgtggagtagaattgattttgtctc-cagaattgattctacttgaagttaggatttgtggcttttgattctaaaattgattttaatgc 37684461  T
Q  386 acgaacttataatt-aactcacttttatatgaatgtacccaaacaca 431  Q
    |  || |||||||| |||||||||||| || |||||| |||||||||    
T  37684462 aaaaatttataattcaactcacttttacataaatgtatccaaacaca 37684508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 431
Target Start/End: Complemental strand, 26100276 - 26100128
Alignment:
Q  284 acatgtttggttgctttcgagtagaattgattttg-tctcgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgattttta 382  Q
    |||||||||||||||| | ||||||||||| |||| |||| | |||||| ||||| || ||| ||   ||| ||||||||||||||| ||||||||||||    
T  26100276 acatgtttggttgcttccaagtagaattgactttggtctc-tagaattggttctatttgaagctaggatttgtagcttttgattctataattgattttta 26100178  T
Q  383 catacgaacttataatt-aactcacttttatatgaatgtacccaaacaca 431  Q
    || || || ||||  || |||||||||||| || |||| | |||||||||    
T  26100177 cacacaaatttatggttcaactcacttttacataaatgcatccaaacaca 26100128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 12742244 - 12742276
Alignment:
Q  286 atgtttggttgctttcgagtagaattgattttg 318  Q
    |||||||||||||||||||||||||||||||||    
T  12742244 atgtttggttgctttcgagtagaattgattttg 12742276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 10367890 - 10367948
Alignment:
Q  221 ttagtatatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaat 279  Q
    ||||| |||||||||||| |||| | |||||||||||||| ||||||||| | ||||||    
T  10367890 ttagtgtatgtttggttctacttctagaggggccaaaattgattatggagatatagaat 10367948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 431
Target Start/End: Original strand, 40848046 - 40848120
Alignment:
Q  358 cttttgattctaaaattgatttttacatacgaacttataatt-aactcacttttatatgaatgtacccaaacaca 431  Q
    ||||||||| || |||||||||| ||| || ||||||||||| |||||| |||||||||||| ||  ||||||||    
T  40848046 cttttgattttagaattgattttcacacacaaacttataattaaactcatttttatatgaatatattcaaacaca 40848120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 431
Target Start/End: Complemental strand, 6027136 - 6027031
Alignment:
Q  327 aattgtttctactttaagataaagtttctagcttttgattctaaaattgatttttacatacgaacttata-attaactcacttttatatgaatgtaccca 425  Q
    ||||| ||||||||  || |||||| | ||||||||||||||| |||||||||| | |||| || ||| |  |||||||| ||||| ||| |||||| ||    
T  6027136 aattgattctacttgtagttaaagtatgtagcttttgattctagaattgattttcatatacaaatttacagtttaactcatttttacatggatgtactca 6027037  T
Q  426 aacaca 431  Q
    ||||||    
T  6027036 aacaca 6027031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 411
Target Start/End: Complemental strand, 13384741 - 13384656
Alignment:
Q  327 aattgtttctactttaagataaagtttctagcttttgattctaaaattgatttttacatacgaacttataatt-aactcactttta 411  Q
    ||||| ||||| || ||| |||| ||| ||||||||||||||| |||||||||| ||| || || ||||| || ||||||||||||    
T  13384741 aattgattctatttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcactttta 13384656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 431
Target Start/End: Complemental strand, 9461560 - 9461520
Alignment:
Q  392 ttataatt-aactcacttttatatgaatgtacccaaacaca 431  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  9461560 ttataattcaactcacttttatatgaatgtatccaaacaca 9461520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 431
Target Start/End: Original strand, 35064962 - 35065166
Alignment:
Q  231 tttggttccacttttggaggggccaaaattaattatggaggtgtaga----atcctgacatgtttggttgctttcgagtagaattgattttgtctcgtgg 326  Q
    ||||||||||||| | |||||| ||||||| ||||||||||||||||    ||  |||||| |||||||||||||||||||||||||||||| |||        
T  35064962 tttggttccacttctcgaggggtcaaaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgattttgcctc-aat 35065060  T
Q  327 aattgtttctactttaagataaagtttctagcttttgattctaaaattgatttttacatacgaacttata-attaactcacttttatatgaatgtaccca 425  Q
    ||||| || ||||| ||| ||   ||| |  |||||||||||| |||||||||||||| || || |||||  |  ||||||||||| ||||||||| |||    
T  35065061 aattgattttacttgaagctagtatttgtgacttttgattctagaattgatttttacacacaaatttatatctccactcacttttacatgaatgtatcca 35065160  T
Q  426 aacaca 431  Q
    ||||||    
T  35065161 aacaca 35065166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 283 - 432
Target Start/End: Complemental strand, 32818500 - 32818351
Alignment:
Q  283 gacatgtttggttgctttcgagtagaattgattttgtctcgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgattttta 382  Q
    ||||| ||||||| |||||||||||||||||||||| |||   |||||| ||||| || ||| || | ||| ||||||||||||||| |||||||||||     
T  32818500 gacatatttggtttctttcgagtagaattgattttgcctc-cagaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttg 32818402  T
Q  383 catacgaacttataatt-aactcacttttatatgaatgtacccaaacacat 432  Q
    || || || ||||| || |||| ||||||| ||||||||| ||||||||||    
T  32818401 cacacaaatttatagttcaactaacttttacatgaatgtatccaaacacat 32818351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 46345013 - 46344926
Alignment:
Q  235 gttccacttttggaggggccaaaattaattatggaggtgtagaatc----ctgacatgtttggttgctttcgagtagaattgattttg 318  Q
    ||||||||| | ||||| |||||||| |||||||||||||| |||     ||||||||||||||||||||| |||| |||||||||||    
T  46345013 gttccacttctagagggcccaaaattgattatggaggtgtataattaattctgacatgtttggttgctttcaagtataattgattttg 46344926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 25319001 - 25319041
Alignment:
Q  282 tgacatgtttggttgctttcgagtagaattgattttgtctc 322  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  25319001 tgacatgtttggttgctctcgagtagaattgattttgtctc 25319041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 421
Target Start/End: Original strand, 45011900 - 45011967
Alignment:
Q  355 tagcttttgattctaaaattgatttttacatacgaacttataa-ttaactcacttttatatgaatgta 421  Q
    ||||||||||||||| |||||||||| ||| || || |||||| || |||||||||||||||||||||    
T  45011900 tagcttttgattctagaattgattttcacacacaaatttataattttactcacttttatatgaatgta 45011967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 33560702 - 33560666
Alignment:
Q  282 tgacatgtttggttgctttcgagtagaattgattttg 318  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33560702 tgacatgtttggttgctctcgagtagaattgattttg 33560666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 315
Target Start/End: Complemental strand, 49139025 - 49138933
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaatc----ctgacatgtttggttgctttcgagtagaattgatt 315  Q
    ||||||||||||||||| |  || |||||||||| ||| | ||||||||||||     |||||||||||||||| |||| |||| ||||||||    
T  49139025 tatgtttggttccacttctaaagtggccaaaattgattctagaggtgtagaattgattctgacatgtttggttgttttcaagtaaaattgatt 49138933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 2327007 - 2326949
Alignment:
Q  221 ttagtatatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaat 279  Q
    ||||| ||||||||||| ||||||| | ||| ||| |||||||||||||||| ||||||    
T  2327007 ttagtgtatgtttggtttcacttttagtgggaccataattaattatggaggtatagaat 2326949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 43868092 - 43868130
Alignment:
Q  284 acatgtttggttgctttcgagtagaattgattttgtctc 322  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  43868092 acatgtttggttgctttctagtagaattaattttgtctc 43868130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 16643982 - 16644070
Alignment:
Q  333 ttctactttaagataaagtttctagcttttgattctaaaattgatttttacatacgaacttataattaactcacttttatatgaatgta 421  Q
    |||||||| ||| || | ||| ||| ||||||||||| ||||||||||||||||  ||  ||| || || ||||| |||||||||||||    
T  16643982 ttctacttgaagctataatttatagattttgattctagaattgatttttacatataaatatatcatcaattcactattatatgaatgta 16644070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 34759542 - 34759470
Alignment:
Q  359 ttttgattctaaaattgatttttacatacgaacttataattaactcacttttatatgaatgtacccaaacaca 431  Q
    ||||||||||| |||||||||||||| |  || ||||  |||||||||||| | ||||||||| | |||||||    
T  34759542 ttttgattctataattgatttttacacattaatttattgttaactcactttaaaatgaatgtatctaaacaca 34759470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 45329741 - 45329789
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgta 275  Q
    |||||||||||||||||||| | | ||||||||| ||||| ||||||||    
T  45329741 tatgtttggttccacttttgtaagagccaaaattgattatagaggtgta 45329789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 227 - 417
Target Start/End: Complemental strand, 5724820 - 5724626
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaatc----ctgacatgtttggttgctttcgagtagaattgattttgtctc 322  Q
    ||||||||||||||||| | |||||||||||||||||| | || |||||||||     ||||||||||||| |||||||  ||||||||||||||| |||    
T  5724820 tatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgattttgcctc 5724721  T
Q  323 gtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgatttttacatacgaacttat-aattaactcacttttatatgaa 417  Q
        ||||| |||||||| ||| ||   ||| || ||||| |||||| |||||||||||||| || ||  ||| | ||||||||||||||||||||    
T  5724720 -caaaattgattctacttgaagctaggatttgtaactttttattctataattgatttttacacacaaatatatcatttaactcacttttatatgaa 5724626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 421
Target Start/End: Original strand, 17225878 - 17225945
Alignment:
Q  355 tagcttttgattctaaaattgatttttacatacgaacttataatt-aactcacttttatatgaatgta 421  Q
    ||||||||||||||| ||||||||||||||||| || ||||| || |||||| ||||| |||||||||    
T  17225878 tagcttttgattctagaattgatttttacatacaaatttatagttcaactcagttttacatgaatgta 17225945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 429
Target Start/End: Original strand, 4910797 - 4911009
Alignment:
Q  221 ttagtatatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaatc----ctgacatgtttggttgctttcgagtagaattgattt 316  Q
    ||||| ||||||||||||||||||| ||| | | | |||| ||| || | |||||||||     ||||||||||||||||   || | |||||||||||     
T  4910797 ttagtgtatgtttggttccacttttagagagactataattgattctgaatgtgtagaattgattctgacatgtttggttgtcgtcaattagaattgattc 4910896  T
Q  317 tgtctcgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgatttttacatacgaacttataatt-aactcacttttatatg 415  Q
    || |||    ||||| |||||||| ||| ||   ||| ||||||||||||||| |||||||||| |||||| || ||||| ||  ||||||||||| ||     
T  4910897 tgcctcaaa-aattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttacata 4910995  T
Q  416 aatgtacccaaaca 429  Q
    |||||| |||||||    
T  4910996 aatgtatccaaaca 4911009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 957735 - 957701
Alignment:
Q  283 gacatgtttggttgctttcgagtagaattgatttt 317  Q
    |||||||||| ||||||||||||||||||||||||    
T  957735 gacatgtttgattgctttcgagtagaattgatttt 957701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 2008631 - 2008597
Alignment:
Q  284 acatgtttggttgctttcgagtagaattgattttg 318  Q
    |||||||||||||||||| ||||||||||||||||    
T  2008631 acatgtttggttgctttctagtagaattgattttg 2008597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 411
Target Start/End: Original strand, 26280559 - 26280688
Alignment:
Q  282 tgacatgtttggttgctttcgagtagaattgattttgtctcgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgattttt 381  Q
    ||||||||||| ||| |||   ||||||||||||||| |||  | ||||| ||| |||| ||| || | ||| ||| ||||||||| |||||||||||||    
T  26280559 tgacatgtttgattgttttttggtagaattgattttgcctcaag-aattgattccacttgaagctagaatttgtagtttttgattccaaaattgattttt 26280657  T
Q  382 acatacgaacttataatt-aactcactttta 411  Q
    || ||| || ||||| || ||||||||||||    
T  26280658 acgtacaaatttatagttaaactcactttta 26280688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 2008470 - 2008429
Alignment:
Q  281 ctgacatgtttggttgctttcgagtagaattgattttgtctc 322  Q
    |||||||||||| ||| |||||||||||||| ||||||||||    
T  2008470 ctgacatgtttgattgttttcgagtagaattcattttgtctc 2008429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 18690626 - 18690659
Alignment:
Q  282 tgacatgtttggttgctttcgagtagaattgatt 315  Q
    |||||||||||||||||||| |||||||||||||    
T  18690626 tgacatgtttggttgctttcaagtagaattgatt 18690659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 24982465 - 24982428
Alignment:
Q  281 ctgacatgtttggttgctttcgagtagaattgattttg 318  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  24982465 ctgacatgtttggttgctatcgagtagagttgattttg 24982428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 7280446 - 7280482
Alignment:
Q  284 acatgtttggttgctttcgagtagaattgattttgtc 320  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  7280446 acatgtttggttgctttcaagtagaattgattgtgtc 7280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 24974110 - 24974162
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaat 279  Q
    |||||||| ||||||||||||||| |||||| |||||| | | ||||||||||    
T  24974110 tatgtttgattccacttttggaggagccaaagttaattgtaggggtgtagaat 24974162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 35098589 - 35098553
Alignment:
Q  282 tgacatgtttggttgctttcgagtagaattgattttg 318  Q
    |||||||||||||| |||| |||||||||||||||||    
T  35098589 tgacatgtttggttacttttgagtagaattgattttg 35098553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 384
Target Start/End: Complemental strand, 28084078 - 28083918
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaatc----ctgacatgtttggttgctttcgagtagaattgattttgtc-t 321  Q
    |||||||| |||||||| | |||| ||||||||| | | |||  |||||||||     ||||||| |||||||| ||||||||||||||||||||||| |    
T  28084078 tatgtttgattccacttctagaggagccaaaattgactctggtagtgtagaattgattctgacatatttggttgttttcgagtagaattgattttgtctt 28083979  T
Q  322 cgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgatttttaca 384  Q
    |||  ||||| |||||||| ||| || | ||| ||||||||||||||| |||| |||||||||    
T  28083978 cgt--aattgattctacttgaagctagaatttgtagcttttgattctataattaatttttaca 28083918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 45660945 - 45660861
Alignment:
Q  220 cttagtatatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaatc----ctgacatgtttggttgctttc 301  Q
    |||||| ||||||| ||||||||| |||||||||||||||| ||| |||||||| |||||     |||||||||||||||||||||    
T  45660945 cttagtgtatgtttcgttccacttctggaggggccaaaattgatt-tggaggtgaagaattgattctgacatgtttggttgctttc 45660861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 380
Target Start/End: Complemental strand, 47892555 - 47892422
Alignment:
Q  250 gggccaaaattaattatggaggtgtagaatc----ctgacatgtttggttgctttcgagtagaattgattttgtctcgtggaattgtttctactttaaga 345  Q
    ||||||||||| |||||||| |||||||||     | | |||||||||||||||| |||||||||||||||| || | | ||| || |||||||| |||     
T  47892555 gggccaaaattgattatggaagtgtagaattgattccgtcatgtttggttgcttttgagtagaattgatttt-tcacctagaactgattctacttaaagc 47892457  T
Q  346 taaagtttctagcttttgattctaaaattgatttt 380  Q
    || |  ||  |||||||||||||| ||||||||||    
T  47892456 tagaaattgaagcttttgattctagaattgatttt 47892422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 421
Target Start/End: Original strand, 11049276 - 11049343
Alignment:
Q  355 tagcttttgattctaaaattgatttttacatacgaacttataatt-aactcacttttatatgaatgta 421  Q
    |||||||||||||||||||||||||||||| || || ||||| || || |||||||||  ||||||||    
T  11049276 tagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcacttttacgtgaatgta 11049343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 431
Target Start/End: Original strand, 30557534 - 30557605
Alignment:
Q  359 ttttgattctaaaattgatttttacatacgaacttataatt-aactcacttttatatgaatgtacccaaacaca 431  Q
    ||||||||||| |||||||||| ||| |  || ||||| || |||||||||||||||||||||| |||||||||    
T  30557534 ttttgattctagaattgattttcacaca--aatttatagttcaactcacttttatatgaatgtatccaaacaca 30557605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 7524139 - 7524216
Alignment:
Q  355 tagcttttgattctaaaattgatttttacatacgaacttataatt-aactcacttttatatgaatgtacccaaacaca 431  Q
    |||||||||||| || |||||||||||||| || || ||||| || |||||||||||| || |||||  |||||||||    
T  7524139 tagcttttgattatagaattgatttttacacacaaatttatagttcaactcacttttacataaatgtgtccaaacaca 7524216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 646134 - 646170
Alignment:
Q  282 tgacatgtttggttgctttcgagtagaattgattttg 318  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  646134 tgacatgtttggttgtttttgagtagaattgattttg 646170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 15478191 - 15478139
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaat 279  Q
    |||||||||||||||||||||||| |||||| || ||| | | ||||||||||    
T  15478191 tatgtttggttccacttttggaggagccaaacttgattttagcggtgtagaat 15478139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 322
Target Start/End: Complemental strand, 1441571 - 1441472
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaatcc----tgacatgtttggttgctttcgagtagaattgattttgtctc 322  Q
    |||||||||||||||||||||||   ||||||||| || | ||||||||||||      |||||||||||||| |||| |||||||||||||||||||||    
T  1441571 tatgtttggttccacttttggagtaaccaaaattatttctagaggtgtagaattgagtttgacatgtttggtttcttttgagtagaattgattttgtctc 1441472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 431
Target Start/End: Complemental strand, 31708298 - 31708221
Alignment:
Q  355 tagcttttgattctaaaattgatttttacatacgaacttataatt-aactcacttttatatgaatgtacccaaacaca 431  Q
    ||||||||||||||| |||||||| | ||| || || |||||||| |||||||||||| ||||||||| |||||||||    
T  31708298 tagcttttgattctagaattgattctaacacacaaatttataattcaactcacttttacatgaatgtatccaaacaca 31708221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 25359763 - 25359711
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaat 279  Q
    ||||||||||||||||||| ||| ||||| |||| ||||||||||| ||||||    
T  25359763 tatgtttggttccacttttagagtggccagaattgattatggaggtatagaat 25359711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 52363960 - 52364008
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgta 275  Q
    ||||||||||||||||||| ||||| |||||||| ||||| ||||||||    
T  52363960 tatgtttggttccacttttagagggaccaaaattgattatagaggtgta 52364008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 12674931 - 12675003
Alignment:
Q  250 gggccaaaattaattatggaggtgtagaat----cctgacatgtttggttgctttcgagtagaattgattttg 318  Q
    ||||||||||| ||| ||||||||||||||    ||| ||||||||||||| |||| |||||| |||||||||    
T  12674931 gggccaaaattgattctggaggtgtagaattgatcctaacatgtttggttgttttcaagtagagttgattttg 12675003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 384
Target Start/End: Original strand, 44771647 - 44771749
Alignment:
Q  281 ctgacatgtttggttgctttcgagtagaattgattttgtctcgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgatttt 380  Q
    |||||||||| || |||| ||  ||||||||| ||||| |||  ||||||| |||||| | ||  || | ||| ||||||||||||||||||||||||||    
T  44771647 ctgacatgttgggctgctatcaggtagaattggttttgcctcc-ggaattgattctacctaaatctagaatttgtagcttttgattctaaaattgatttt 44771745  T
Q  381 taca 384  Q
    ||||    
T  44771746 taca 44771749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 384
Target Start/End: Complemental strand, 32523467 - 32523370
Alignment:
Q  287 tgtttggttgctttcgagtagaattgattttgtctcgtggaattgtttctacttt-aagataaagtttctagcttttgattctaaaattgatttttaca 384  Q
    |||||||||||||||||||| ||| ||||||| |||    |||| |||||||||  ||| ||   ||| ||||||||||||||||||||||||||||||    
T  32523467 tgtttggttgctttcgagtaaaatagattttgcctccat-aattatttctacttggaagttaggatttgtagcttttgattctaaaattgatttttaca 32523370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 380
Target Start/End: Original strand, 35058255 - 35058412
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaatta-attatggaggtgtagaa----tcctgacatgtttggttgctttcgagtagaattgattttgtct 321  Q
    ||||||||||| ||||| ||||||| ||||||||  ||| | ||| |||||||    | || ||||||||| | ||| ||||||||||||||||||| ||    
T  35058255 tatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctctcgagtagaattgattttgcct 35058354  T
Q  322 cgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgatttt 380  Q
    |   |||||| ||||||||  || || |  ||| |||||||||||||| ||||||||||    
T  35058355 c-aagaattgattctacttggagctagaaattcgagcttttgattctagaattgatttt 35058412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 48410944 - 48410907
Alignment:
Q  281 ctgacatgtttggttgctttcgagtagaattgattttg 318  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  48410944 ctgagatgtttgattgctttcgagtagaattgattttg 48410907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 3776438 - 3776486
Alignment:
Q  231 tttggttccacttttggaggggccaaaattaattatggaggtgtagaat 279  Q
    |||||||||||||||||||| | |||||||  |||| ||||||||||||    
T  3776438 tttggttccacttttggaggagacaaaattggttatagaggtgtagaat 3776486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 3845302 - 3845250
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaat 279  Q
    |||||||||||||||||||||||   |||||||| ||| | ||||||||||||    
T  3845302 tatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaat 3845250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 51285454 - 51285506
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaat 279  Q
    ||||||||||||||||||| |||  ||| ||||||||| | ||||||||||||    
T  51285454 tatgtttggttccactttttgagtagccgaaattaattctagaggtgtagaat 51285506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 431
Target Start/End: Original strand, 32596020 - 32596094
Alignment:
Q  358 cttttgattctaaaattgatttttacatacgaacttataatt-aactcacttttatatgaatgtacccaaacaca 431  Q
    |||||||||||||||||||||||||||||| || | |||||| |||||||||||| || ||| || |||||||||    
T  32596020 cttttgattctaaaattgatttttacatacaaattcataattcaactcacttttacataaatatatccaaacaca 32596094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 7629751 - 7629809
Alignment:
Q  221 ttagtatatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaat 279  Q
    ||||| |||||||||||||||||||||||| ||||| ||| ||| | ||||||||||||    
T  7629751 ttagtgtatgtttggttccacttttggaggagccaagattgattctagaggtgtagaat 7629809  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 7630370 - 7630406
Alignment:
Q  282 tgacatgtttggttgctttcgagtagaattgattttg 318  Q
    |||||||||||||||||||| ||||||||||||||||    
T  7630370 tgacatgtttggttgctttcaagtagaattgattttg 7630406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 37745954 - 37745906
Alignment:
Q  335 ctactttaagataaagtttctagcttttgattctaaaattgatttttac 383  Q
    |||||||||| |||| |||||||||||| |||| |||||||||||||||    
T  37745954 ctactttaagttaaaatttctagctttttattccaaaattgatttttac 37745906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 374
Target Start/End: Complemental strand, 6327254 - 6327109
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaatcctgacatgtttggttgctttcgagtagaattgattttgtctcgtgg 326  Q
    ||||||||||| ||||||| |||    ||||||| ||| | ||||| ||||||| ||||||||||||||| | | || || |||||||| ||| || | |    
T  6327254 tatgtttggtttcacttttagagaaaacaaaattgattctagaggtttagaatc-tgacatgtttggttgttgttgattaaaattgattatgtttc-tag 6327157  T
Q  327 aattgtttctactttaagataaagtttctagcttttgattctaaaatt 374  Q
    ||||| |||||||| ||  |||| ||| ||| ||||||||||||||||    
T  6327156 aattgattctacttgaaactaaaatttgtagtttttgattctaaaatt 6327109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 43501096 - 43501130
Alignment:
Q  281 ctgacatgtttggttgctttcgagtagaattgatt 315  Q
    ||||||||||||||||||||| |||||||||||||    
T  43501096 ctgacatgtttggttgctttcaagtagaattgatt 43501130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 315
Target Start/End: Complemental strand, 33047748 - 33047650
Alignment:
Q  221 ttagtatatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaatc----ctgacatgtttggttgctttcgagtagaattgatt 315  Q
    ||||| ||||||||||| | ||| | ||||| |||||||| ||| ||||||||||||||     || ||||||||| |||||  |||||||||||||||    
T  33047748 ttagtttatgtttggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgattctcacatgtttgattgctgacgagtagaattgatt 33047650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 42740975 - 42741032
Alignment:
Q  327 aattgtttctactttaagataaagtttctagcttttgattctaaaattgatttttaca 384  Q
    ||||| |||||||| ||| |||  ||| ||||||||||||||| ||||||||||||||    
T  42740975 aattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttaca 42741032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 680469 - 680421
Alignment:
Q  231 tttggttccacttttggaggggccaaaattaattatggaggtgtagaat 279  Q
    |||||||||||||||||||| || |||||| ||| | ||||||||||||    
T  680469 tttggttccacttttggaggagctaaaattgattctagaggtgtagaat 680421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 8800754 - 8800682
Alignment:
Q  358 cttttgattctaaaattgatttttacatacgaacttataatt-aactcacttttatatgaatgtacccaaaca 429  Q
    ||||||| |||| |||||||||| | |||| || |||||||| |||||||||||| ||||| ||| |||||||    
T  8800754 cttttgaatctataattgattttaatatacaaatttataattcaactcacttttacatgaacgtatccaaaca 8800682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 12037017 - 12037112
Alignment:
Q  284 acatgtttggttgctttcgagtagaattgattttgtctcgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgatttt 380  Q
    ||||||||||||| | ||| ||||||||| || ||| || | |||||| ||||| || ||  |||| ||| ||||||||||||||| ||||||||||    
T  12037017 acatgtttggttgttgtcgtgtagaattggttatgtgtc-tagaattgattctagttgaaactaaaatttgtagcttttgattctacaattgatttt 12037112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 32777924 - 32777960
Alignment:
Q  282 tgacatgtttggttgctttcgagtagaattgattttg 318  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  32777924 tgacatgtttggttgttttcgtgtagaattgattttg 32777960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 17111828 - 17111862
Alignment:
Q  281 ctgacatgtttggttgctttcgagtagaattgatt 315  Q
    |||||||||||||||||||||||||||||||||||    
T  17111828 ctgacatgtttggttgctttcgagtagaattgatt 17111862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 427
Target Start/End: Original strand, 40491534 - 40491677
Alignment:
Q  284 acatgtttggttgctttcgagtagaattgattttgtctcgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgatttttac 383  Q
    ||||| ||||||||||||||  | ||||||||||| ||   | |||||  ||||||| ||| |||  ||| ||||||||||||||| |||||| ||||||    
T  40491534 acatggttggttgctttcgaagataattgattttgccttcag-aattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttac 40491632  T
Q  384 atacgaacttata-attaactcacttttatatgaatgtacccaaa 427  Q
    | || || ||| |  |||||||||||||| ||||||||| |||||    
T  40491633 acacaaatttaaagtttaactcacttttacatgaatgtatccaaa 40491677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 38123836 - 38123786
Alignment:
Q  229 tgtttggttccacttttggaggggccaaaattaattatggaggtgtagaat 279  Q
    |||||||||||||||||||||| ||||||||| ||| | ||| ||||||||    
T  38123836 tgtttggttccacttttggaggagccaaaattgattctagagatgtagaat 38123786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 12306688 - 12306724
Alignment:
Q  282 tgacatgtttggttgctttcgagtagaattgattttg 318  Q
    ||||||||||||||||| || ||||||||||||||||    
T  12306688 tgacatgtttggttgctctcaagtagaattgattttg 12306724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 12306931 - 12306967
Alignment:
Q  282 tgacatgtttggttgctttcgagtagaattgattttg 318  Q
    ||||||||||||||||| | |||||||||||||||||    
T  12306931 tgacatgtttggttgctcttgagtagaattgattttg 12306967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 15903683 - 15903643
Alignment:
Q  278 atcctgacatgtttggttgctttcgagtagaattgattttg 318  Q
    ||||||||||||||||||||||||  | |||||||||||||    
T  15903683 atcctgacatgtttggttgctttcatgcagaattgattttg 15903643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 45004974 - 45005010
Alignment:
Q  282 tgacatgtttggttgctttcgagtagaattgattttg 318  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  45004974 tgacatgtttggttgctctcgaatagaattgattttg 45005010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 9449406 - 9449358
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgta 275  Q
    ||||||||||||||| ||||||| ||||  |||||||||||||||||||    
T  9449406 tatgtttggttccacatttggagtggcctgaattaattatggaggtgta 9449358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 10860011 - 10859960
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaa 278  Q
    |||||||||||||||||||||| | | ||||||| ||||| |||||||||||    
T  10860011 tatgtttggttccacttttggaagaggcaaaattcattatagaggtgtagaa 10859960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 383
Target Start/End: Complemental strand, 43310669 - 43310571
Alignment:
Q  284 acatgtttggttgctttcgagtagaattgattttgtctcgtggaattgtttctactttaagataaagtttctagcttttgattctaaaattgatttttac 383  Q
    ||||||||||||| ||||||||||||||||||||  ||  | ||||||||  || || |||||| |  || |||||||||||| || |||||||||||||    
T  43310669 acatgtttggttgttttcgagtagaattgatttt-acttttagaattgttgttatttgaagatagaaattgtagcttttgattatagaattgatttttac 43310571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 260
Target Start/End: Original strand, 15368138 - 15368171
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaatt 260  Q
    |||||||||||||||||||||||| |||||||||    
T  15368138 tatgtttggttccacttttggaggagccaaaatt 15368171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 10898676 - 10898712
Alignment:
Q  282 tgacatgtttggttgctttcgagtagaattgattttg 318  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  10898676 tgacatgtttggttgctctcgagtaaaattgattttg 10898712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 29922848 - 29922888
Alignment:
Q  282 tgacatgtttggttgctttcgagtagaattgattttgtctc 322  Q
    ||||||||||||||| | ||||| |||||||||||||||||    
T  29922848 tgacatgtttggttgttctcgagcagaattgattttgtctc 29922888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 38845701 - 38845649
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaat 279  Q
    ||||||||||||||||| | ||| | |||||||| ||| ||||||||||||||    
T  38845701 tatgtttggttccacttctagagagaccaaaattgattctggaggtgtagaat 38845649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 315
Target Start/End: Original strand, 31721 - 31813
Alignment:
Q  227 tatgtttggttccacttttggaggggccaaaattaattatggaggtgtagaatc----ctgacatgtttggttgctttcgagtagaattgatt 315  Q
    ||||||||||||||||| | ||| | |||||||| ||| | ||||||||||||     |||||||||||||||| | ||||||| ||||||||    
T  31721 tatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgatt 31813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Original strand, 2654 - 2683
Alignment:
Q  358 cttttgattctaaaattgatttttacatac 387  Q
    ||||||||||||||||||||||||||||||    
T  2654 cttttgattctaaaattgatttttacatac 2683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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