View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11301_low_18 (Length: 438)
Name: NF11301_low_18
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_18 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 1606662 - 1606255
Alignment:
| Q |
13 |
gatggacatcacttcattgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtggcgctaagatcagcctccgatctctcag |
112 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1606662 |
gatggacttcacttcattgcacgtgacataaccttccaaaataccgccggtccacacaagggtcaagcagtggcgctaagatcagcctccgatctctcag |
1606563 |
T |
|
| Q |
113 |
ttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagactt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606562 |
ttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagactt |
1606463 |
T |
|
| Q |
213 |
catctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606462 |
catctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggt |
1606363 |
T |
|
| Q |
313 |
gacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggta |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1606362 |
gacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggca |
1606263 |
T |
|
| Q |
413 |
ggccttgg |
420 |
Q |
| |
|
|||||||| |
|
|
| T |
1606262 |
ggccttgg |
1606255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 1629960 - 1629553
Alignment:
| Q |
13 |
gatggacatcacttcattgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtggcgctaagatcagcctccgatctctcag |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1629960 |
gatggacttcacttcattgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtggcgctaagatcagcgtccgatctctcag |
1629861 |
T |
|
| Q |
113 |
ttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagactt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629860 |
ttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagactt |
1629761 |
T |
|
| Q |
213 |
catctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggt |
312 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
1629760 |
catctttggcaacgccgcagtggtattccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcactgcccaaggtcgaggt |
1629661 |
T |
|
| Q |
313 |
gacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggta |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
1629660 |
gacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaaacctgttgttgacaagtacaaaaccttcttgggca |
1629561 |
T |
|
| Q |
413 |
ggccttgg |
420 |
Q |
| |
|
| |||||| |
|
|
| T |
1629560 |
gaccttgg |
1629553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 420
Target Start/End: Original strand, 10820738 - 10821145
Alignment:
| Q |
13 |
gatggacatcacttcattgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtggcgctaagatcagcctccgatctctcag |
112 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| | |
|
|
| T |
10820738 |
gatggacttcacttcattgcacgtgacataaccttccaaaataccgccggtccacacaagggtcaagcagtggcgctccgatcagcctctgatctctccg |
10820837 |
T |
|
| Q |
113 |
ttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagactt |
212 |
Q |
| |
|
| ||||| |||||| | ||||| ||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10820838 |
tcttctaccggtgtacaatatcgggttaccaagacaccctcatggctcatgcacaacgtcaattttacagacaatgcttcatctatggcaccgtagactt |
10820937 |
T |
|
| Q |
213 |
catctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggt |
312 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
10820938 |
catctttggcaacgctgcagtggtattccaaaattgcaacattttcgcaagaaaacctttagatggccaagctaacatgatcactgcccaaggtcgaggt |
10821037 |
T |
|
| Q |
313 |
gacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggta |
412 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
10821038 |
gatccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttaggaa |
10821137 |
T |
|
| Q |
413 |
ggccttgg |
420 |
Q |
| |
|
| |||||| |
|
|
| T |
10821138 |
gaccttgg |
10821145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 1623784 - 1623377
Alignment:
| Q |
13 |
gatggacatcacttcattgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtggcgctaagatcagcctccgatctctcag |
112 |
Q |
| |
|
||||||| ||| ||||||||||| ||||| ||||| |||||||| || ||||| ||||| || |||||||||||||| ||||||||||||||||||| | |
|
|
| T |
1623784 |
gatggacttcatttcattgcacgtgacattacctttcaaaatactgctggtcctcacaaaggccaagctgtggcgctccgatcagcctccgatctctctg |
1623685 |
T |
|
| Q |
113 |
ttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagactt |
212 |
Q |
| |
|
| |||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
1623684 |
tcttctatcggtgtgctatatcgggctatcaagacactctgatggctcatgcacaacgtcaattctaccgacaatgcttcatctatggcaccgtagactt |
1623585 |
T |
|
| Q |
213 |
catctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggt |
312 |
Q |
| |
|
|||||||||||| || ||||| || |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
1623584 |
catctttggcaacgctgcagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggt |
1623485 |
T |
|
| Q |
313 |
gacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggta |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1623484 |
gacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaa |
1623385 |
T |
|
| Q |
413 |
ggccttgg |
420 |
Q |
| |
|
|||||||| |
|
|
| T |
1623384 |
ggccttgg |
1623377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 2576071 - 2576132
Alignment:
| Q |
193 |
atctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacat |
254 |
Q |
| |
|
|||||||||||||| |||||||| || ||||| || || || |||||||||||||||||||| |
|
|
| T |
2576071 |
atctatggcaccgtcgacttcattttcggcaacgcagctgtagttttccaaaattgtaacat |
2576132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 18781478 - 18781071
Alignment:
| Q |
13 |
gatggacatcacttcattgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtggcgctaagatcagcctccgatctctcag |
112 |
Q |
| |
|
||||||| ||| |||||||| || |||||||||||||||||||| || ||||| || || ||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
18781478 |
gatggacttcatttcattgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtggcgctccgatcagcctccgatctctctg |
18781379 |
T |
|
| Q |
113 |
ttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagactt |
212 |
Q |
| |
|
| |||||||||||||| ||||| || || |||||||| || ||||| ||||| |||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
18781378 |
tcttctatcggtgtgctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacagacaatgcttcatctatggcaccgtcgactt |
18781279 |
T |
|
| Q |
213 |
catctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggt |
312 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
18781278 |
tatctttggcaacgccgcagtagtgttccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcacggcccaaggtcgaggt |
18781179 |
T |
|
| Q |
313 |
gacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggta |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18781178 |
gacccattccaaaacactggaatttcattccacaattgtcaaattatggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggca |
18781079 |
T |
|
| Q |
413 |
ggccttgg |
420 |
Q |
| |
|
|||||||| |
|
|
| T |
18781078 |
ggccttgg |
18781071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 12802984 - 12802719
Alignment:
| Q |
73 |
ggtcaagctgtggcgctaagatcagcctccgatctctcagttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtc |
172 |
Q |
| |
|
|||||||| |||||||| |||||||||| || || || || ||||| || ||| || | ||| || |||||||| || |||| ||| |||||||||| |
|
|
| T |
12802984 |
ggtcaagcagtggcgcttcgatcagcctctgacctatctgtcttctaccgttgttcctttaaaggctaccaagacaccctcatggttcacgcacaacgtc |
12802885 |
T |
|
| Q |
173 |
aattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaaccttt |
272 |
Q |
| |
|
||||||| || |||| | ||||||||||||||| ||||||||||||||||| || || || ||||||||||| || | ||| | | |||| ||||| |
|
|
| T |
12802884 |
aattttacagagaatgttacatctatggcaccgttgacttcatctttggcaacgcagccgtagttttccaaaactgcatgattcttgttagaaggccttt |
12802785 |
T |
|
| Q |
273 |
agatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttc |
338 |
Q |
| |
|
| | || ||||| ||||||||||| ||||||||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
12802784 |
aaacggccaagcaaacatgatcacggcccaaggtcgtgatgacccatttcaaaacactggaatttc |
12802719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 8767056 - 8767130
Alignment:
| Q |
192 |
catctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaa |
266 |
Q |
| |
|
|||||||||||| || || ||||||||||| || ||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
8767056 |
catctatggcacagttgatttcatctttggtaacgccgcggtagttttgcaaaattgtaacattttcgcaagaaa |
8767130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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