View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_19 (Length: 431)
Name: NF11301_low_19
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_19 |
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| [»] scaffold0457 (1 HSPs) |
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| [»] scaffold0478 (1 HSPs) |
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Alignment Details
Target: scaffold0457 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 8901 - 9093
Alignment:
| Q |
1 |
agagtaaaactaaagcctaaaccaaagcccctatgaaattccatgaaatgtacttcattgagcttagttgtggtgattcc-tgatctataccacaggaga |
99 |
Q |
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| T |
8901 |
agagtaaaactaaagcctaaaccaaggcccctctgaaattccatgaaatgtacttcattgagcttagttgtggtgattccatgatctataccacaggaga |
9000 |
T |
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| Q |
100 |
agcttcagcccataacaaggaattgtccaaaagagtatccgctatcaaatcccacttgtcccaaaggttaggaagatggggtggtctgttatt |
192 |
Q |
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| T |
9001 |
agcttcagcccctaacaaggaattgtccaaaagagtatccgcaatcaaatcccacttgtcccaaaggttaggaagatggggtggtctattatt |
9093 |
T |
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Target: scaffold0478 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 410
Target Start/End: Original strand, 5342 - 5455
Alignment:
| Q |
297 |
aaatatacttcattgagaaatattagaggatatgcgtgtttttgatcttgttaaaacagtgtcataaccatcatcagcaacaagctctgagaccttctta |
396 |
Q |
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| T |
5342 |
aaatatacttcattgggaaatatttgtggaagtatgtgtttttgatcttgttaaaacaatatcagaaccatcatcaacaacaggttctgagaacctctta |
5441 |
T |
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| Q |
397 |
ttcttcatcttagt |
410 |
Q |
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| T |
5442 |
ttcttaaacttagt |
5455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 17225873 - 17225770
Alignment:
| Q |
192 |
tatgaatcttgtgccaaaaccaagcaggagctgaagcaaaaggaaccataggttcagctnnnnnnnngaaaatcgggcttatgtgtctttatcatttgta |
291 |
Q |
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| T |
17225873 |
tatgaatcttgtgccaaaaccaatcaggaacagaaacataaggaaccattggttcagct-aaaaagagaaaatcaggcttatgtgtttctatcatttgta |
17225775 |
T |
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| Q |
292 |
tgaga |
296 |
Q |
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||||| |
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| T |
17225774 |
tgaga |
17225770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 17225923 - 17225891
Alignment:
| Q |
160 |
ccaaaggttaggaagatggggtggtctgttatt |
192 |
Q |
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| T |
17225923 |
ccaaaggttaggaagatggggtggtctattatt |
17225891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 410
Target Start/End: Complemental strand, 8034168 - 8034055
Alignment:
| Q |
297 |
aaatatacttcattgagaaatattagaggatatgcgtgtttttgatcttgttaaaacagtgtcataaccatcatcagcaacaagctctgagaccttctta |
396 |
Q |
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||||| ||||||||| |||||||| | ||| | ||||||||||||||||||||||| | ||| ||||||||||| ||||| | || |||| | ||||| |
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| T |
8034168 |
aaatagacttcattgggaaatatttgtggaagtatgtgtttttgatcttgttaaaacaatatcagaaccatcatcaacaacaggttcagagaacctctta |
8034069 |
T |
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| Q |
397 |
ttcttcatcttagt |
410 |
Q |
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||||| | |||||| |
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| T |
8034068 |
ttcttaaacttagt |
8034055 |
T |
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