View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_2 (Length: 856)
Name: NF11301_low_2
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 790; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 1 - 839
Target Start/End: Original strand, 31718384 - 31719221
Alignment:
| Q |
1 |
actctttggtttggaaatgttgtaaaatttggctgttgcattggctcttgtttcaatcttttatggttgccgaagttaaagaaatatgaaatcaatacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31718384 |
actctttggtttggaaatgttgtaaaatttggctgttgcattggctcttgtttcaatcttttatggttgccgaagttaaagaaatatgaaatgaatacta |
31718483 |
T |
|
| Q |
101 |
gacagtccttgactacaattgacatgatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcagtagaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31718484 |
gacagtccttgactacaattgacatgatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcggtagaatat |
31718583 |
T |
|
| Q |
201 |
gacgcgagtgcatccgaaatgtacacatattacctcaacaaattataatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatgcag |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31718584 |
gatgcgagtgcatccgaaatgtacacatattacctcaacaaattataatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatgcag |
31718683 |
T |
|
| Q |
301 |
gtatccttttttagcaaacttcaaacttataacaagaaacctgcgagatctagcacggttaatgattaataatcattgtttattttgtgtgtttttgtct |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
31718684 |
gtatccttttttagcaaacttcaaacttataacaagaaacctgcgagatctagcacggttactgattaataatgattgtttattttgtgtgtttttgtct |
31718783 |
T |
|
| Q |
401 |
tgactttcattgtggtaaggatatgagatttggattacaccttttcagttgtattaaaacattgttaatacatacattcaaaagttcaacatattgagat |
500 |
Q |
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| T |
31718784 |
tgactttcattgtggtaaggatatgagatttggattacaccttttcagttgtattaaaacattgttaatacatacattcaaaagttcaacatattgagat |
31718883 |
T |
|
| Q |
501 |
catgaaagatttccggtaatctgtttttgttgtggatggtttgttggcagggtcatgggaaatctctttgattgatgctaggaatgttgaaagccaatga |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31718884 |
catgaaagatttccggtaatctgtttttgttgtggatggtttgttggcagggtcatgggaaatctctttgattgatgctaggaatgttgaaagccaatga |
31718983 |
T |
|
| Q |
601 |
cagatatggttttgttacaaaaaccagatttttcattaaaaactggtccaacttatgaggnnnnnnnnatctcaaagttcatttgccactgaaaactact |
700 |
Q |
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| T |
31718984 |
cagatatggttttgttacaaaaaccagatttttcattaaaaactggtccaacttatgagg-tttttttatctcaaagttcatttgccactgaaaactact |
31719082 |
T |
|
| Q |
701 |
cttaaggtgaggactttattgcctggagatttaattaaccctatagttggctgccttcttagaacgaatatttgagcagttccacgacattcctgtaaaa |
800 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719083 |
cttaaggtgaggactttattgcctggagatttaattaaccctatagttggctgccttcttagaacgaatatttgagcagttccacgacattcctgtaaaa |
31719182 |
T |
|
| Q |
801 |
gagataaatacaacaatacaaagtttctcatttcttgga |
839 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
31719183 |
gagataaatacaacaatacaaagtttctcatttcttgga |
31719221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 126 - 367
Target Start/End: Original strand, 31709954 - 31710194
Alignment:
| Q |
126 |
gatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcagtagaatatgacgcgagtgcatccgaaatgtaca |
225 |
Q |
| |
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|||||||||||||||| | |||| ||||| || |||||| | |||||| ||||||||| |||||| ||||||| ||||||| |||||||| ||||| |
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| T |
31709954 |
gatgtgttctttatttccaaatgaaatgtgagttattgacct-ctgattgttgacaggttcactcagcagaatatattgcgagtgtatccgaaaggtaca |
31710052 |
T |
|
| Q |
226 |
catattacctcaacaaattataatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatgcaggta-tccttttttagcaaacttcaa |
324 |
Q |
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| ||||||||| ||||||||||||||||| ||||||||||||||| |||| | |||||||||||||| ||||||||| | ||||||||||| |||| | |
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| T |
31710053 |
cgcattacctcatcaaattataatccattaattgggtggatgcatggagctcagatggttgcatttaacatgcaggtactgtttttttagcaagcttc-a |
31710151 |
T |
|
| Q |
325 |
acttataacaagaaacctgcgagatctagcacggttaatgatt |
367 |
Q |
| |
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| T |
31710152 |
atatataacaagaaacctgtgaggtctagcacggctactgatt |
31710194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 126 - 358
Target Start/End: Complemental strand, 31011383 - 31011147
Alignment:
| Q |
126 |
gatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcagtagaatatgacgcgagtgcatccgaaatgtaca |
225 |
Q |
| |
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|||||||||||||||||| |||| ||||| || ||||||| ||||||| ||||||||| |||||| ||||||| ||||||| |||||||| ||||| |
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| T |
31011383 |
gatgtgttctttatttgcaaatgaaatgtgagttattgatcctctgattgttgacaggttcactcagcagaatatattgcgagtgtatccgaaaggtaca |
31011284 |
T |
|
| Q |
226 |
catattacctcaacaaattataatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatgcaggta-----tccttttttagcaaact |
320 |
Q |
| |
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| ||||||||| ||||||||||||||||| |||| |||||||||| |||| | |||||||||||||| ||||||||| | ||||||||||| || |
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| T |
31011283 |
cgcattacctcatcaaattataatccattaattggttggatgcatggagctcagatggttgcatttaacatgcaggtattttttatttttttagcaagct |
31011184 |
T |
|
| Q |
321 |
tcaaacttataacaagaaacctgcgagatctagcacgg |
358 |
Q |
| |
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|| || |||||||||||||||| ||| |||||||||| |
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| T |
31011183 |
tc-aatatataacaagaaacctgtgaggtctagcacgg |
31011147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 362 - 649
Target Start/End: Original strand, 31710222 - 31710508
Alignment:
| Q |
362 |
atgattaataatcattgtttattttgtgtgtttttgtcttgactttcattgtggtaaggatatgagatttggattacacct--tttcagttgtattaaaa |
459 |
Q |
| |
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|||||| ||||||||||||||||| ||| ||||||||||||||||| |||||| ||||| ||||| ||| | | || | |||||| ||||| || | |
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| T |
31710222 |
atgatttataatcattgtttatttcgtgc--ttttgtcttgactttcactgtggtgaggatgtgagaattgattaatacttcctttcagctgtatcaaga |
31710319 |
T |
|
| Q |
460 |
cattgttaatacatacattcaaaagttcaacatattgagatcatgaaagatttccggtaa-tctgtttttgttgtggatggtttgttggcagggtcatgg |
558 |
Q |
| |
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||||||||| |||| ||| | || | |||||||||||||||||||||||| ||| | | ||||||| |||| ||||| |||||||||| |||| |
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| T |
31710320 |
cattgttaagacatctattatttactt-atgatattgagatcatgaaagatttccattaattttttttttgtcgtgggtggttctttggcagggttatgg |
31710418 |
T |
|
| Q |
559 |
gaaatctctttgattgatgctaggaatgttgaaagccaatgacagatatggttttgttacaaaaaccagatttttcattaaaaactggtcc |
649 |
Q |
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| T |
31710419 |
gagatctctttggttgatgcaaggaatgtttaaagccaatggaggatgcggttttgtta-aaaaaccagattttctattaaaaactggtcc |
31710508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 35552268 - 35552331
Alignment:
| Q |
239 |
caaattataatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatgcaggt |
302 |
Q |
| |
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||||||||||||||||| |||||||||| |||| |||| ||||||||||||| || |||||||| |
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|
| T |
35552268 |
caaattataatccattaattgggtggattcatggagctcaaatggttgcattcaacatgcaggt |
35552331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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