View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_21 (Length: 409)
Name: NF11301_low_21
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 5 - 393
Target Start/End: Original strand, 28940380 - 28940766
Alignment:
| Q |
5 |
tcgacagtgaatggtgtgccatttgcatgaccattgataagaacagcttgagggagtggaagtttgtgtccaaaatctagaactttcctcagcttctgaa |
104 |
Q |
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| T |
28940380 |
tcgacagtgaatgatgtgccatttgcatgaccattgataagaacagcttgagggagtggaagtttgtgtccaaaatctagaactttcctcagcttctgaa |
28940479 |
T |
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| Q |
105 |
attcatataatcacatgttaataaaaattataagactaaaaataaatcggaacaatttaagccatgggtgaactaaattggagacatgacgatgtttagc |
204 |
Q |
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| T |
28940480 |
attcatataatcacatgttaataaaaattataagac--aaaataaatcggaacaatttaagccatgggtgaactaaattggagacgtgacgatgtttagc |
28940577 |
T |
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| Q |
205 |
tagggactaaattatctagatttatttttcttcgagactaataagtaattttatatttctcggatactatattaaattatgcatgaagcaaatttgagtc |
304 |
Q |
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| T |
28940578 |
tagggactaaattatctagatttatttttcttcgagactaataagtaattttatatttctcggatactatattaaattatgcatgaagcaaaattgagtc |
28940677 |
T |
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| Q |
305 |
attaccgtgtgatcaatcttgtaccaatcaccaataagaaatgtgtaatcattagctggttcagggaaaggaacaggaatccttggtct |
393 |
Q |
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| T |
28940678 |
attaccgtgtgatcaatcttgtaccaatcaccaataagaaatgtgtaatcattagctggttcagggaaaggaacaggaatccttggtct |
28940766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 393
Target Start/End: Original strand, 53754323 - 53754394
Alignment:
| Q |
322 |
cttgtaccaatcaccaataagaaatgtgtaatcattagctggttcagggaaaggaacaggaatccttggtct |
393 |
Q |
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||||||||||||||||||||| | |||||||| |||||||||||||||||| || ||||| || ||||| |
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| T |
53754323 |
cttgtaccaatcaccaataaggacagtgtaatctccagctggttcagggaaagggactggaattctaggtct |
53754394 |
T |
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