View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_22 (Length: 383)
Name: NF11301_low_22
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 50654014 - 50653664
Alignment:
| Q |
17 |
cagaaagagaacagatatcgtacgttttcttcttgattagtcattttccatgattattttctcctctttttcaccctttatattctcaaatcatttgatg |
116 |
Q |
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| T |
50654014 |
cagaaagaaaacagatatcgtacgtcttcttcttgattagtcattttccatgattattttctcctcttcttcaccctttatattctcaaatcatttgatg |
50653915 |
T |
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| Q |
117 |
agataaaattaatcgcatctaactggcgtagaaagcagctttattttaatatgatttctatatt-nnnnnnnnnnnnngacaaatcatttatcaattatc |
215 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50653914 |
agataaaattagtcgcatctaactggcgtagaaagcagctttattttaatatgatttctatattaaaaaaaaaaaaaagacaaatcatttatcaattatc |
50653815 |
T |
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| Q |
216 |
acgattctacgtgaataattataatcannnnnnngagcaaccatgacaaaagaagttcactcattccatttttaataatatacctctcttactctgttaa |
315 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50653814 |
acgattctacgtgaataattataatcatttttttgcgcaaccatgacaaaagaagttcactcattccatttttaataatatacctctcttactctg---- |
50653719 |
T |
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| Q |
316 |
atttaaatttgaatttggtgtggcggcagaacctcttctgaaattttgatggcctatg |
373 |
Q |
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||||||||||||||||||||||||||| ||| ||| | |||||||||||||||||| |
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| T |
50653718 |
--ttaaatttgaatttggtgtggcggcaggacc-cttttaaaattttgatggcctatg |
50653664 |
T |
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