View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_23 (Length: 380)
Name: NF11301_low_23
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 367
Target Start/End: Original strand, 9607486 - 9607840
Alignment:
| Q |
13 |
tagggccaaaataactatattaactcttaaatgttaacattgaatatatctataactaatgataatttagtaacatagacgtatatt-----tgagatac |
107 |
Q |
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| T |
9607486 |
tagggccaaaataactat--taactcttaaatgttaacattgaatatatctataactaatgataatttagtaacatagacgtatattatatttgagatac |
9607583 |
T |
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| Q |
108 |
aacttttcttattagtcgtgnnnnnnnnngttataattgctattttactaatcagaaaccgaatttatggatatgaaaaaataaaatttgatttaagact |
207 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9607584 |
aacttttcttattagtcgtgtttttt---gttacaattgctattttactaatcagaaaccgaatttatggatatgaaaaaataaaatttgatttaagact |
9607680 |
T |
|
| Q |
208 |
taatttgatctctcaaaatttggaagcgacccaattcagtctcagacaaaatatatcatctaaataaatctctcacatttttatacatggaacacattcc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9607681 |
taatttgatctctcaaaatttggaagcgacccaattcagtctcagacaaaatatatcatctaaataaatctctcacatttttatacatggaacacattcc |
9607780 |
T |
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| Q |
308 |
ctttaccctctgtcttttgtatatcattgtaatgttttctattaatctcaaatacactct |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9607781 |
ctttaccctctgtcttttgtatatcattgtaatgttttctattaatctcaaatacactct |
9607840 |
T |
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