View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_24 (Length: 378)
Name: NF11301_low_24
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 41884626 - 41884988
Alignment:
| Q |
19 |
aaggtgtccttgaattcaatga---tccctcgactgnnnnnnnntaaaagacatagagtaagagagtggagtttgttaggttcaagtttgagggggatag |
115 |
Q |
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| T |
41884626 |
aaggtgtccttgaattcaatgaatatccctcgactgaaaaaaaataaaagacatagagtaagagagtggagtttgttaggttcaattttgagggggatag |
41884725 |
T |
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| Q |
116 |
tttctgatcgactgttaaagggcttaacattgaatttataaaagaggtgactcatattttcaatgacatggatcattatctctacaattgcattgtcaag |
215 |
Q |
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| T |
41884726 |
tttctgatcgactgttaaagggcttaacattgaatttataaaagaggtgactcatattttcaatgacatggatcattatctctacaattacattgtcaag |
41884825 |
T |
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| Q |
216 |
ttttgctatgaagtttgacatgaagaattttgatggatgaatcaatttcgcttgtgaaaaattaaagtcaaaggtgtattcattcaattaagattagata |
315 |
Q |
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| T |
41884826 |
ttttgctatgaagtttgacatgaagaattttgatggatgaatcaatttcgcttgtgaaaaattaaagtcaaaggtgtattcattcaattaagattagata |
41884925 |
T |
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| Q |
316 |
aggtgtttaattatacatgagcatttatcgacatttgtgcgagatgtgatgcgatatcatgtt |
378 |
Q |
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| T |
41884926 |
aggtgtttaattatacatgagcatttatcgacatttgtgcgagatgtgatgcgatattatgtt |
41884988 |
T |
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