View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_25 (Length: 348)
Name: NF11301_low_25
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 64 - 332
Target Start/End: Original strand, 11107929 - 11108198
Alignment:
| Q |
64 |
ttgtgcatggaattttgcacgaaaa-aatccaagattgaaaacgcaagcggctatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcac |
162 |
Q |
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| T |
11107929 |
ttgtgcatcgaattttgcacgaaaaaaatccaagattgaaaacgcaagcggttatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcac |
11108028 |
T |
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| Q |
163 |
atcggaagatttgcacccggtgttacaagttatcgatttgaagcttgttcagtcgcagcagaatagtagtactgagagattccgagtcgttctctccgat |
262 |
Q |
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| T |
11108029 |
atcggaagaattgcacccggtgttacaattcatcgatttgaagcctgttcagtcgcagcagaatagtgctatcgagatataccaactctttctctccgat |
11108128 |
T |
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| Q |
263 |
ggtttacattatgaacaaggaatgcttgctacacagaagaatgagttggttcataatggaaggttgcaga |
332 |
Q |
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| T |
11108129 |
ggtttgcattatgaacatggaatgcttgctaaacagaagaatgagttggttcataatggaaggttgcaga |
11108198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 115 - 332
Target Start/End: Original strand, 11116179 - 11116396
Alignment:
| Q |
115 |
tatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcacatcggaagatttgcacccggtgttacaagttatcgatttgaagcttgttcag |
214 |
Q |
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| T |
11116179 |
tatggccgtgaatctaactcagggtgcgatagtaacgatgtgtttcacatcggaagatttgcacccggtgttacaagttatcgatttgaagcttgttcag |
11116278 |
T |
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| Q |
215 |
tcgcagcagaatagtagtactgagagattccgagtcgttctctccgatggtttacattatgaacaaggaatgcttgctacacagaagaatgagttggttc |
314 |
Q |
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| T |
11116279 |
tcgcagcagaatagtggtactgagagataccgagtcgttctctccgatggtttgcattatcaacaaggaatgctcgctacacagaagaatgagttggttc |
11116378 |
T |
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| Q |
315 |
ataatggaaggttgcaga |
332 |
Q |
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| T |
11116379 |
attctggaaggttgcaga |
11116396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 115 - 332
Target Start/End: Original strand, 11111701 - 11111918
Alignment:
| Q |
115 |
tatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcacatcggaagatttgcacccggtgttacaagttatcgatttgaagcttgttcag |
214 |
Q |
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| T |
11111701 |
tatggctgtgaatctgacccaaggtgcgataataacaatgtgtttcacatcggaagtatgggaaccggtgttacaagttttcgatatgaagcttgttcag |
11111800 |
T |
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| Q |
215 |
tcgcagcagaatagtagtactgagagattccgagtcgttctctccgatggtttacattatgaacaaggaatgcttgctacacagaagaatgagttggttc |
314 |
Q |
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| T |
11111801 |
tcgcagcagaataacactactgagccgtaccgactagttctctccgatggtttgtattatcaacaaggaatgctcgttgtgcagaagaaccatttggttc |
11111900 |
T |
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| Q |
315 |
ataatggaaggttgcaga |
332 |
Q |
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| T |
11111901 |
attctggaaggttgcaga |
11111918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 108 - 284
Target Start/End: Original strand, 11108966 - 11109142
Alignment:
| Q |
108 |
aagcggctatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcacatcggaagatttgcacccggtgttacaagttatcgatttgaagct |
207 |
Q |
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| T |
11108966 |
aagcggttatggctgtgaatctgacacaaggtgcgataatgaagatgtgtttcacatcggaggaaatccaaccggttttacaagttatcgatttgaagct |
11109065 |
T |
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| Q |
208 |
tgttcagtcgcagcagaatagtagtactgagagattccgagtcgttctctccgatggtttacattatgaacaaggaa |
284 |
Q |
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| T |
11109066 |
tttgcagtcgcagcaaaatagcactactaaaatgtaccaactcgttctctccgatggttcacattataaacaaggaa |
11109142 |
T |
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