View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_28 (Length: 329)
Name: NF11301_low_28
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 53089565 - 53089256
Alignment:
| Q |
7 |
gttacagctgagctggaggaaacacaagaaaatctagagaaagctaaagaagaaagcatgttgatggcacattgtatgtcatctcttcaggaagaactcg |
106 |
Q |
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| T |
53089565 |
gttacagctgagctggaggagacacgagaaaatctagagaaagctaaagaagaaagcatgttgatggcacattgtatgtcatctcttcaggaagaactcg |
53089466 |
T |
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| Q |
107 |
aacgcacgaagcaagagctcgaacaattgaagcaacgtgaaactgaaaaacatcaagtggaatcatcagaaactgaagacgtgaagtttgttgagaattt |
206 |
Q |
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| T |
53089465 |
aacgcacgaagcaagagctcgaacaattgaagcaacgtgaaactgaaaaacatcaagtggaatcatcagaaactgaagacgtgaagtttgttgagaattt |
53089366 |
T |
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| Q |
207 |
aacaacctttgaagtgaaaagttcaagatttgatgaagaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53089365 |
aacaacctttgaagtgaaaagttcaagatttgatgaagaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttct |
53089266 |
T |
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| Q |
307 |
catgtgatgt |
316 |
Q |
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|||||||||| |
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| T |
53089265 |
catgtgatgt |
53089256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 162 - 316
Target Start/End: Complemental strand, 14334119 - 14333965
Alignment:
| Q |
162 |
agtggaatcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaagtgaaaagttcaagatttgatgaagaattaatgatggagttt |
261 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14334119 |
agtgaaatcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaactgaaaagttcaagatttgatgaagaattaatgatggaattt |
14334020 |
T |
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| Q |
262 |
caaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
14334019 |
caaaagaaaaggtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgt |
14333965 |
T |
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