View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_29 (Length: 317)
Name: NF11301_low_29
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 28402972 - 28402780
Alignment:
| Q |
10 |
ggactcaaaacagaaaactatgaaccaatttgatttgttgtttactttctacatggctatttttatcatatatattgtacagaagaaattgcatttaatt |
109 |
Q |
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| T |
28402972 |
ggactcaaaacagaaaactatgaaccaatttgatttgttgtttactttctacatggctatttttatcatatatattgtacagaagatattgcatttaatt |
28402873 |
T |
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| Q |
110 |
tcatggttgatgtatgtcccttatttatatgtttctatgcaacattattaatgaagagttctgattgttgtttatggtataatcctcgtagga |
202 |
Q |
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| T |
28402872 |
tcatggttgatgtatgtcccttatttatatgtttctatgcaacattattaatgaagagttctgattgttgtttatggtataatcctcgtagga |
28402780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 28402426 - 28402356
Alignment:
| Q |
230 |
gaacacctctttgttgttttggtcataaatcacacaattttcatgttcaaataacactttgtagccattct |
300 |
Q |
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| T |
28402426 |
gaacacctctttgttgttttggtcataaatcacacaattttcatgttcaaataacactttgtagccattct |
28402356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 19931379 - 19931314
Alignment:
| Q |
233 |
cacctctttgttgttttggtcataaatcacacaattttcatgttcaaataacactttgtagccatt |
298 |
Q |
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| T |
19931379 |
cacctctttgttgttttggtcattaatcacacaattttcatgttcaaataacactttgtagccatt |
19931314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 19133918 - 19133988
Alignment:
| Q |
230 |
gaacacctctttgttgttttggtcataaatcacacaattttcatgttcaaataacactttgtagccattct |
300 |
Q |
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| T |
19133918 |
gaacacctcttcgttgttttggtcattaatcatacaactttcatgttcaaataacactttgtaaccattct |
19133988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 19375013 - 19374953
Alignment:
| Q |
48 |
tgtttactttctacatggctatttttatcatatatattgtacagaagaaattgcatttaattt |
110 |
Q |
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| T |
19375013 |
tgtttactttctacagggctatttttatca--tatactgtacttaggaaattgcatttaattt |
19374953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 32842095 - 32842220
Alignment:
| Q |
94 |
gaaattgcatttaatttcatggttgatgtatgtcccttatttatatgtttctatgcaacattattaatgaagagttctgattgttgtt-----tatggta |
188 |
Q |
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| T |
32842095 |
gaaattgcatttgatttcattgttgatgtatatccctgatttgtatgtttctgtgcaacattattaattatgtgtgctgattgttgtttcaggtttggta |
32842194 |
T |
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| Q |
189 |
taatcctcgtaggacatgatcactat |
214 |
Q |
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| T |
32842195 |
taatcgtcgtaggacatgatcactat |
32842220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 32835969 - 32836094
Alignment:
| Q |
94 |
gaaattgcatttaatttcatggttgatgtatgtcccttatttatatgtttctatgcaacattattaatgaagagttctgattgttgtt-----tatggta |
188 |
Q |
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| T |
32835969 |
gaaattgcatttgatttcattgttgatgtatatccctgatttgtatgtttctgtgcaacattattaattttgtgtgctgattgttgtttcaggtttggta |
32836068 |
T |
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| Q |
189 |
taatcctcgtaggacatgatcactat |
214 |
Q |
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| T |
32836069 |
taatcgtcgtaggacatgatcactat |
32836094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 32531693 - 32531635
Alignment:
| Q |
237 |
tctttgttgttttggtcataaatcacacaattttcatgttcaaataacactttgtagcc |
295 |
Q |
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||||| |||||||| || | ||||||||| || ||||||||||| |||||||||||||| |
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| T |
32531693 |
tctttattgttttgatctttaatcacacacttctcatgttcaaacaacactttgtagcc |
32531635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 32835575 - 32835615
Alignment:
| Q |
10 |
ggactcaaaacagaaaactatgaaccaatttgatttgttgt |
50 |
Q |
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| T |
32835575 |
ggactcaaaacagacaattattaaccaatttgatttgttgt |
32835615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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