View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_33 (Length: 287)
Name: NF11301_low_33
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 4085651 - 4085914
Alignment:
| Q |
18 |
attagaatgcgtgattttgtgtctttgcagttgagcttatgaaggctggaaatacagtaatcattcgcaattcaaagatcgacatgtttaagggatcaat |
117 |
Q |
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| T |
4085651 |
attagaatgcgtgattttgtgtctttgcagttgagcttatgaaggctggaaatacagtaatcattcgcaattcaaagatcgacatgtttaagggatcaat |
4085750 |
T |
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| Q |
118 |
gaggctggccgttgacaaatgggggcgcattgaggtcactgaccctgcagagttcgttgttaaagaggataacaacctatctctcattgaatatgaattg |
217 |
Q |
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| T |
4085751 |
gaggctggccgttgacaaatgggggcgcattgaggtcactgaccctgcagagttcgttgttaaagaggataacaacctatctctcattgaatatgaattg |
4085850 |
T |
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| Q |
218 |
gtgaacgcggtagaagagtaattcatagttaaag-gggcaacaacctatcttttgtctgtgctg |
280 |
Q |
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| T |
4085851 |
gtgaacgcggtagaagagtaattcatagttaaagagggcaactacctatcttttgtttgtgctg |
4085914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 240
Target Start/End: Original strand, 38789224 - 38789372
Alignment:
| Q |
92 |
aagatcgacatgtttaagggatcaatgaggctggccgttgacaaatgggggcgcattgaggtcactgaccctgcagagttcgttgttaaagaggataaca |
191 |
Q |
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| T |
38789224 |
aagattgacatgttcaagggatctatgaggctggcggttgataggtgggggcgtatagaggtcacagagcctgcaaattttgaagttagggaggataaca |
38789323 |
T |
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| Q |
192 |
acctatctctcattgaatatgaattggtgaacgcggtagaagagtaatt |
240 |
Q |
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| T |
38789324 |
atctttcattagttgaatatgaattggtcaatgtcgttgaagagtaatt |
38789372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 27113793 - 27113677
Alignment:
| Q |
98 |
gacatgtttaagggatcaatgaggctggccgttgacaaatgggggcgcattgaggtcactgaccctgcagagttcgttgttaaagaggataacaacctat |
197 |
Q |
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||||||||||| |||||||||||||| || || ||||||||||| || |||| || || || ||||| || ||| |||||| || || |||||||| | |
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| T |
27113793 |
gacatgtttaaaggatcaatgaggcttgctgtggacaaatggggccgtgttgaagtaacagatcctgctgatttcactgttaaggaagacaacaacctgt |
27113694 |
T |
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| Q |
198 |
ctctcattgaatatgaa |
214 |
Q |
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| T |
27113693 |
cccttattgaatatgaa |
27113677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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