View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11301_low_36 (Length: 275)

Name: NF11301_low_36
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11301_low_36
NF11301_low_36
[»] chr5 (2 HSPs)
chr5 (27-198)||(12251491-12251662)
chr5 (33-192)||(12244885-12245044)
[»] chr7 (1 HSPs)
chr7 (121-164)||(33355202-33355245)
[»] chr8 (1 HSPs)
chr8 (121-193)||(26676742-26676814)
[»] chr2 (2 HSPs)
chr2 (121-161)||(40442544-40442584)
chr2 (121-161)||(40503701-40503741)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 12251491 - 12251662
Alignment:
Q  27 gaagaggaaagcaagttaaaacaaaccaccgtgtgcatcaaaaaagttgttgacaagaatgtacaaagctataaaaaattggacaaaacttaagtggttc 126  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12251491 gaaggggaaagcaagtgaaaacaaaccaccgtgtgcatcaaaaaagttgttgacaagaatgtactaagctataaaaaattggacaaaacttaagtggttc 12251590  T
Q  127 ttcacataaaattcacattttgtggttataacaaacttcaaaaatattatggattcgaaaaatcatccatag 198  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12251591 ttcacataaaatccacattttgtggttataacaaacttcaaaaatattatggattcgaaaaatcatccatag 12251662  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 192
Target Start/End: Original strand, 12244885 - 12245044
Alignment:
Q  33 gaaagcaagttaaaacaaaccaccgtgtgcatcaaaaaagttgttgacaagaatgtacaaagctataaaaaat-tggacaaaacttaagtggttcttcac 131  Q
    |||||||||| ||||||||||||| |   ||| |||||||||||||||| |||||  | |||||||||||||  ||||||||||| | ||| ||||||||    
T  12244885 gaaagcaagtgaaaacaaaccaccatcaacattaaaaaagttgttgacaggaatgagctaagctataaaaaaaatggacaaaactcatgtgattcttcac 12244984  T
Q  132 ataaaattcacattttgtggttataacaaacttcaaaaatattatggattcgaaaaatcat 192  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  12244985 ataaaatccacattttatggttataacaaacttcaaaaatattatggatt-gaaaaatcat 12245044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 33355202 - 33355245
Alignment:
Q  121 tggttcttcacataaaattcacattttgtggttataacaaactt 164  Q
    |||||||||||||||||||||| | ||||| |||||||||||||    
T  33355202 tggttcttcacataaaattcacttgttgtgcttataacaaactt 33355245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 26676742 - 26676814
Alignment:
Q  121 tggttcttcacataaaattcacattttgtggttataacaaacttcaaaaatattatggattcgaaaaatcatc 193  Q
    ||||||||||||| ||||| |  ||||| |||||||||||||||  | || |||||||||| || ||||||||    
T  26676742 tggttcttcacattaaattaattttttgaggttataacaaactttgacaaaattatggatttgataaatcatc 26676814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 40442584 - 40442544
Alignment:
Q  121 tggttcttcacataaaattcacattttgtggttataacaaa 161  Q
    |||||||||||||||||||||  || |||||||||||||||    
T  40442584 tggttcttcacataaaattcattttgtgtggttataacaaa 40442544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 40503741 - 40503701
Alignment:
Q  121 tggttcttcacataaaattcacattttgtggttataacaaa 161  Q
    |||||||||||||||||||||  || |||||||||||||||    
T  40503741 tggttcttcacataaaattcattttgtgtggttataacaaa 40503701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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