View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_38 (Length: 265)
Name: NF11301_low_38
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 28403062 - 28403317
Alignment:
| Q |
1 |
catgcttgagtttagttagcacttaagctaaatattttgccaaaaaagaaagtaattcatctaggcaagtagttaattt----attaaataattagataa |
96 |
Q |
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| T |
28403062 |
catgcttgagtttagttagcacttaagctaaatattttgccaaaaaagaaagtaattcatctaggcaagtagttaatttatttattaaataattagataa |
28403161 |
T |
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| Q |
97 |
atgttacattgacaacgtaatatagttttcttttttaaggacaacgcaatatagttgaaaataatgcaaaacatgtgtaacaaatgaaggaaaaacaaat |
196 |
Q |
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| T |
28403162 |
atgttacattaacaacgtaatatagttttcttttttaaggacaacgcaatatagttgaaaataatgcaaaacatgtgtaacaaattaaggaaaaacaaat |
28403261 |
T |
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| Q |
197 |
caaagtagttaaaccaatttgaatcttcttcaagaatatctctgaatctctgtgct |
252 |
Q |
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| T |
28403262 |
caaagtagttaaaccaatttgaatcttcttcaagaatatctctgaatctctgtgct |
28403317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 32835538 - 32835438
Alignment:
| Q |
20 |
cacttaagctaaatattttgccaaaaaagaaagtaattcatctaggcaagtagttaatttattaaataattagataaatgttacattgacaacgtaatat |
119 |
Q |
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| T |
32835538 |
cacttaagcttaatattttgccaaaaaagaaagcaattcagctagacaaatagttactttattaaataattagctaaaagttaaattaacaacgcaatat |
32835439 |
T |
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| Q |
120 |
a |
120 |
Q |
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| T |
32835438 |
a |
32835438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 32835450 - 32835363
Alignment:
| Q |
137 |
acaacgcaatatagttgaaaataatgcaaaacatgtgtaacaaatgaaggaaaaacaaatcaaagtagttaaaccaatttgaatcttc |
224 |
Q |
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||||||||||||| || ||||| || ||||| ||||||||||||| ||||||||| ||| ||| || || | |||||||||| |||| |
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| T |
32835450 |
acaacgcaatatattttaaaattattcaaaatatgtgtaacaaattaaggaaaaaataatgaaaatacttgagccaatttgaaacttc |
32835363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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