View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_40 (Length: 259)
Name: NF11301_low_40
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 52153359 - 52153603
Alignment:
| Q |
1 |
catgacacacagtttcctccctatcttcacagagaacacaaactgtagaactttccggatctattactttgtgccaagctaaatttcttcctgttggtat |
100 |
Q |
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| T |
52153359 |
catgacacacagtttcctccctatcttcacaaagaacacaaactgtagaactttccggatctattactttgcgccaagctaaatttcttcctgttggtat |
52153458 |
T |
|
| Q |
101 |
acggtctagaagtggtttccaagagaaagcaagcgtcagactcttccacaagaaactaaacacttgttctgccactatgtccaaattctcttccaacacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52153459 |
acggtctagaagtggtttccaagagaaagcaagcgtcagactcttccacaagaaactaaacacttgttctgccactatgtccaaattctcttccaacacc |
52153558 |
T |
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| Q |
201 |
accaacccctctaacaatctatattttgatttcaccgtaaactct |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52153559 |
accaacccctctaacaatctatattttgatttcaccgtaaactct |
52153603 |
T |
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