View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11301_low_41 (Length: 256)

Name: NF11301_low_41
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11301_low_41
NF11301_low_41
[»] chr6 (2 HSPs)
chr6 (18-256)||(22706823-22707061)
chr6 (38-86)||(21618466-21618515)
[»] chr1 (1 HSPs)
chr1 (18-109)||(18896385-18896476)
[»] scaffold0273 (1 HSPs)
scaffold0273 (40-113)||(5840-5913)
[»] chr8 (2 HSPs)
chr8 (27-113)||(22461514-22461600)
chr8 (39-86)||(22673992-22674040)
[»] chr2 (6 HSPs)
chr2 (27-113)||(19115308-19115394)
chr2 (58-110)||(26618955-26619007)
chr2 (39-98)||(23184165-23184225)
chr2 (39-98)||(23595422-23595482)
chr2 (75-113)||(18430794-18430832)
chr2 (39-86)||(33074442-33074490)
[»] chr4 (3 HSPs)
chr4 (33-113)||(11901381-11901460)
chr4 (27-111)||(17540603-17540687)
chr4 (33-100)||(17787894-17787962)
[»] scaffold0040 (1 HSPs)
scaffold0040 (37-113)||(1342-1418)
[»] chr3 (2 HSPs)
chr3 (74-113)||(12397266-12397305)
chr3 (40-85)||(5213781-5213826)
[»] scaffold0078 (1 HSPs)
scaffold0078 (75-113)||(31660-31698)
[»] chr5 (1 HSPs)
chr5 (39-86)||(29138279-29138327)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 22706823 - 22707061
Alignment:
Q  18 gttctaaaatacatcagaagttgacgtcatcagaagcatgtcatcacaagcaagtttaccagaagctgacatcatcagaagttctgaagatcatcacaac 117  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22706823 gttctaaagtacatcaaaagttgacgtcatcagaagcatgtcatcacaagcaagtttaccagaagctgacatcatcagaagttctgaagatcatcacaac 22706922  T
Q  118 cttacctcaacgagaatcctcgcaaaaatcctctcaaaaggccagctccttatctgaactatcctttgtctcctcattagaacaaacaaactctcttata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22706923 cttacctcaacgagaatcctcgcaaaaatcctctcaaaaggccagctccttatctgaactatcctttgtctcctcatcagaacaaacaaactctcttata 22707022  T
Q  218 tatccctcattcacatgagccagtcaacatttatgaacc 256  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22707023 tatccctcattcacatgagccagtcaacatttatgaacc 22707061  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 21618515 - 21618466
Alignment:
Q  38 ttgacgtcatcagaagcatgt-catcacaagcaagtttaccagaagctga 86  Q
    |||||||||||||||||| || ||||| ||||||||||| ||||||||||    
T  21618515 ttgacgtcatcagaagcaagttcatcagaagcaagtttatcagaagctga 21618466  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 18896385 - 18896476
Alignment:
Q  18 gttctaaaatacatcagaagttgacgtcatcagaagcatgtcatcacaagcaagtttaccagaagctgacatcatcagaagttctgaagatc 109  Q
    ||||| || ||||||||||| |||||||||||||||||  |||||| |||| |||| |||||| ||||||||||||||||||||||||||||    
T  18896385 gttctgaagtacatcagaagctgacgtcatcagaagcacctcatcagaagctagttcaccagaggctgacatcatcagaagttctgaagatc 18896476  T

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Target: scaffold0273 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 5913 - 5840
Alignment:
Q  40 gacgtcatcagaagcatgtcatcacaagcaagtttaccagaagctgacatcatcagaagttctgaagatcatca 113  Q
    |||||||||| |||||  |||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  5913 gacgtcatcaaaagcacctcatcagaagcaagttcaccagaagctgacatcatcagaagctctgaagatcatca 5840  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 22461514 - 22461600
Alignment:
Q  27 tacatcagaagttgacgtcatcagaagcatgtcatcacaagcaagtttaccagaagctgacatcatcagaagttctgaagatcatca 113  Q
    ||||||||||| |||||||||||||||||  |||||| ||||||| | | ||||||| ||  |||||||||||||||||||||||||    
T  22461514 tacatcagaagctgacgtcatcagaagcacctcatcagaagcaaggtcagcagaagcagatttcatcagaagttctgaagatcatca 22461600  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 22674040 - 22673992
Alignment:
Q  39 tgacgtcatcagaagcatgt-catcacaagcaagtttaccagaagctga 86  Q
    ||||||||||||||||| || ||||| ||||||||||| ||||||||||    
T  22674040 tgacgtcatcagaagcaagttcatcagaagcaagtttatcagaagctga 22673992  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 19115394 - 19115308
Alignment:
Q  27 tacatcagaagttgacgtcatcagaagcatgtcatcacaagcaagtttaccagaagctgacatcatcagaagttctgaagatcatca 113  Q
    |||||||||||||||||||||||||||||  |||||| ||||||| | ||||||||| ||  |||||| ||||| ||||||||||||    
T  19115394 tacatcagaagttgacgtcatcagaagcacctcatcagaagcaaggtcaccagaagcagatttcatcataagttttgaagatcatca 19115308  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 26618955 - 26619007
Alignment:
Q  58 tcatcacaagcaagtttaccagaagctgacatcatcagaagttctgaagatca 110  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  26618955 tcatcagaagcaagttcaccagaagctgacatcatcagaagttctgaagatca 26619007  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 23184165 - 23184225
Alignment:
Q  39 tgacgtcatcagaagcatgtcatcacaagcaagtttaccagaagctg-acatcatcagaag 98  Q
    |||||||||||||||||  |||||| ||||||||| ||||||||||| | |||||||||||    
T  23184165 tgacgtcatcagaagcacctcatcagaagcaagttcaccagaagctgaagatcatcagaag 23184225  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 23595422 - 23595482
Alignment:
Q  39 tgacgtcatcagaagcatgtcatcacaagcaagtttaccagaagctg-acatcatcagaag 98  Q
    |||||||||||||||||  |||||| ||||||||| ||||||||||| | |||||||||||    
T  23595422 tgacgtcatcagaagcacctcatcagaagcaagttcaccagaagctgaagatcatcagaag 23595482  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 18430794 - 18430832
Alignment:
Q  75 accagaagctgacatcatcagaagttctgaagatcatca 113  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  18430794 accagaagctgacgtcatcagaggttctgaagatcatca 18430832  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 33074490 - 33074442
Alignment:
Q  39 tgacgtcatcagaagcatgt-catcacaagcaagtttaccagaagctga 86  Q
    ||||||||||||||||| || ||||| ||||||||||| ||||||||||    
T  33074490 tgacgtcatcagaagcaagttcatcagaagcaagtttatcagaagctga 33074442  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 11901460 - 11901381
Alignment:
Q  33 agaagttgacgtcatcagaagcatgtcatcacaagcaagtttaccagaagctgacatcatcagaagttctgaagatcatca 113  Q
    ||||| || ||||||||||||||  |||||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  11901460 agaagctggcgtcatcagaagcacctcatcagaagca-gttcaccagaagctgacgtcatcagaagttctgaagatcatca 11901381  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 17540687 - 17540603
Alignment:
Q  27 tacatcagaagttgacgtcatcagaagcatgtcatcacaagcaagtttaccagaagctgacatcatcagaagttctgaagatcat 111  Q
    ||||||||||| |||||||||||||||||  |||||| ||||||| | ||||||||||| | |||| | |  |||||||||||||    
T  17540687 tacatcagaagctgacgtcatcagaagcacctcatcagaagcaagatcaccagaagctgtcttcattaaacattctgaagatcat 17540603  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 17787894 - 17787962
Alignment:
Q  33 agaagttgacgtcatcagaagca-tgtcatcacaagcaagtttaccagaagctgacatcatcagaagtt 100  Q
    ||||| ||||||||||||||||| | |||||| |||| |||| ||||||||||||||||||||| ||||    
T  17787894 agaagctgacgtcatcagaagcactctcatcagaagctagttcaccagaagctgacatcatcaggagtt 17787962  T

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Target: scaffold0040 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 1342 - 1418
Alignment:
Q  37 gttgacgtcatcagaagcatgtcatcacaagcaagtttaccagaagctgacatcatcagaagttctgaagatcatca 113  Q
    ||||| |||||||||||||  |||||| || |||| | |||||||||||||||||| ||||| | ||||||||||||    
T  1342 gttgatgtcatcagaagcacctcatcagaaccaagatcaccagaagctgacatcattagaagatttgaagatcatca 1418  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 12397305 - 12397266
Alignment:
Q  74 taccagaagctgacatcatcagaagttctgaagatcatca 113  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  12397305 taccagaagctgacatcatcagaggttctgaagatcatca 12397266  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 5213826 - 5213781
Alignment:
Q  40 gacgtcatcagaagcatgtcatcacaagcaagtttaccagaagctg 85  Q
    ||||||||||||||||  |||||| ||||||||||| |||||||||    
T  5213826 gacgtcatcagaagcagttcatcataagcaagtttatcagaagctg 5213781  T

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Target: scaffold0078 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 31660 - 31698
Alignment:
Q  75 accagaagctgacatcatcagaagttctgaagatcatca 113  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  31660 accagaagctgacgtcatcagaggttctgaagatcatca 31698  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 29138279 - 29138327
Alignment:
Q  39 tgacgtcatcagaagcatgt-catcacaagcaagtttaccagaagctga 86  Q
    ||||||||||||||||| || ||||| ||||||||||| ||||||||||    
T  29138279 tgacgtcatcagaagcaagttcatcagaagcaagtttatcagaagctga 29138327  T

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