View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_42 (Length: 250)
Name: NF11301_low_42
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2794935 - 2795174
Alignment:
| Q |
1 |
tatatgccggattgggcacaaccagccttcaaaggaatgatacaattgaatagagtgcagagcaaggtatacgagactgctctgtttaaatcggataatc |
100 |
Q |
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| T |
2794935 |
tatatgccggattgggcacaaccagccttcaaaggaatgatacaattgaatagagtgcagagcaaggtatatgagactgctctgtttaaatcggataatc |
2795034 |
T |
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| Q |
101 |
ttttactttgtgctacaactggtgctggaaaaaccaatgttgctgttcttaccatacttcaagagattgcacggcatagaaatcctggtgatggttcaat |
200 |
Q |
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| T |
2795035 |
ttttactttgtgctccaactggtgctggaaaaaccaatgttgctgttcttaccatacttcaagagattgcacggcatagaaatcctggtgatggttcaat |
2795134 |
T |
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| Q |
201 |
tgaccatagtgcttataaaattgtttatgttgcgcctatg |
240 |
Q |
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| T |
2795135 |
tgaccatagtgcttataaaattgtttatgttgcgcctatg |
2795174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 29262451 - 29262680
Alignment:
| Q |
4 |
atgccggattgggcacaaccagccttcaaaggaatgatacaattgaatagagtgcagagcaaggtatacgagactgctctgtttaaatcggataatcttt |
103 |
Q |
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| T |
29262451 |
atgcctgattgggcacaaccggctttcaaaggaatgacacagttgaatagagttcagagcaaggtttatgaaactgctctcttcaaacctgataatttgt |
29262550 |
T |
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| Q |
104 |
tactttgtgctacaactggtgctggaaaaaccaatgttgctgttcttaccatacttcaagagattgcacggcatagaaatcctggtgatggttcaattga |
203 |
Q |
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| T |
29262551 |
tgctttgtgcccctaccggtgctggaaaaacgaatgttgctgttcttactatccttcaacagattgcgcggcataggaataccgatgatggttctattga |
29262650 |
T |
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| Q |
204 |
ccatagtgcttataaaattgtttatgttgc |
233 |
Q |
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| T |
29262651 |
ccacagtgcatataaaattgtatatgttgc |
29262680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 29189747 - 29189686
Alignment:
| Q |
4 |
atgccggattgggcacaaccagccttcaaaggaatgatacaattgaatagagtgcagagcaa |
65 |
Q |
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||||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||||| |
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| T |
29189747 |
atgcctgattgggcacaaccagctttcaaaggaatgactcacctgaatagagtgcagagcaa |
29189686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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