View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_47 (Length: 229)
Name: NF11301_low_47
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2794836 - 2794614
Alignment:
| Q |
1 |
catcaggaagatcacattttccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaagtatccggcattgacccccattttcccc |
100 |
Q |
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| T |
2794836 |
catcaggaagatcacattttccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaagcatccggcgttgacccccattttcccc |
2794737 |
T |
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| Q |
101 |
aactccatcaccagttcccctatcaatgtccatgtccccgtctttcaaccttcgagcctcgtaccttatactcttctccaagttcttctccctctctata |
200 |
Q |
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| T |
2794736 |
aactccatcaccagttcccctatcaatgtccatgtccccgtctttcaaccttcgagcctcgtaccttatactcttctccaagttcttctccctctctata |
2794637 |
T |
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| Q |
201 |
gtagaggctttcacaacatataa |
223 |
Q |
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||||||||||||||| ||||||| |
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| T |
2794636 |
gtagaggctttcacagcatataa |
2794614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 29262349 - 29262277
Alignment:
| Q |
1 |
catcaggaagatcacattttccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaag |
73 |
Q |
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|||||||||| ||||||||| ||||| |||||| || |||||||||||||||| |||||||| |||||||| |
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| T |
29262349 |
catcaggaaggtcacattttttctttgccataaataacccaccttgttcaaaagtgaggttatctaaatcaag |
29262277 |
T |
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