View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11301_low_6 (Length: 713)
Name: NF11301_low_6
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 465
Target Start/End: Original strand, 47458412 - 47458860
Alignment:
| Q |
17 |
aaatccaactccaaccttgtcaacttctctcagagaaaaacaacaaactagttctggttccggtagcaatatcaataattcgtcaggtagggttcaaccg |
116 |
Q |
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| T |
47458412 |
aaatccaactccaaccttgtcaacttctctcagagaaaaacaacaaactagttctggttccggtagcaatatcaataattcgtcaggtagggttcaaccg |
47458511 |
T |
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| Q |
117 |
gggggtgtgaatggcaatttcgtgtattatttgccgcaagatgaagctgtcgctgctggttttggtgctgaagatggtggattggatgcccttgaatctc |
216 |
Q |
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| T |
47458512 |
gggggtgtgaatggcaatttcgtgtattatttgccgcaagatgaagctgtcgctgctggttttggtgctgaagatggtggattggatgcccttgaatctc |
47458611 |
T |
|
| Q |
217 |
agaaagttgttgatcttctcaattctcagttgtctcgtttgctcaagttgaaacccaaagatttttggtcacaaggtacatcattttaatcagtttaatt |
316 |
Q |
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| T |
47458612 |
agaaagttgttgatcttctcaattctcagttgtcttgtttgctcaagttgaaacccaaagatttttggtcacaaggtacatcattttaatcagtttaatt |
47458711 |
T |
|
| Q |
317 |
gaagttaaacatttttagtgatgtgatctgacaatttacaattatgattgattgaatgtgtattatgaattaacttctattgtaatattatctaactaat |
416 |
Q |
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| T |
47458712 |
gaagttaaacatttttagtgatgtgatctgacaatttacaattatgattgattgaatgtgtaatatgaattaacttctattgtaatattatctaactaat |
47458811 |
T |
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| Q |
417 |
atttgttaaaattcatcatccatgcatggcttgtgctattacgttggaa |
465 |
Q |
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| T |
47458812 |
atttgttaaaattcatcatccatgcatggcgtgtgctattacgttggaa |
47458860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 535 - 696
Target Start/End: Original strand, 47458930 - 47459091
Alignment:
| Q |
535 |
ttgtatttgtagtggccagtgatacatccctgcatgagtttctcaacagctttctgcaatttagaagcaggtggtatgatttccctcaccgtggggccag |
634 |
Q |
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| T |
47458930 |
ttgtatttgtagtggccagtgatacatccctgcatgagtttctcaacagctttctgcaatttagaagcaggtggtatgatttccctcaccgtggggccag |
47459029 |
T |
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| Q |
635 |
agggattgttgctggtgttatttttggagagcatgatttgagccgtcgtgttttcatgatgt |
696 |
Q |
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| T |
47459030 |
agggattgttgctggtgttatttttggagagcatgatttgagccgtcgtgttttcatgatgt |
47459091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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