View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11301_low_8 (Length: 645)
Name: NF11301_low_8
Description: NF11301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11301_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 19 - 637
Target Start/End: Complemental strand, 47423362 - 47422724
Alignment:
| Q |
19 |
gaagctcccaacatatataaatagatgtatttctccgcagtcactggggtggactgcagtatgctaacaagttataatttgaaccgtgattttcttctaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47423362 |
gaagctcccaacatatataaatagatgtatttctccgcagtcactggggtggactgcagtatgctaacaagttataatttgaaccgtgattttcttctaa |
47423263 |
T |
|
| Q |
119 |
caaaacaaggatgctaatcaccaagcaaaacaattaaaagaaacgnnnnnnntatatggttgaactaattattttgatggnnnnnnnnn---------tg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
47423262 |
caaaacaaggatgctaatcaccaagcaaaacaattaaaagaaacgaaaaaaatatatggttgaactaattattttgatgaaaaaaaaaaaaacaaaaatg |
47423163 |
T |
|
| Q |
210 |
ggacaagtaaacaaattcaaaaatatattttctcaccggctaattcactgattgcatgataaacatgatgt-----------------ttatactacccc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47423162 |
ggacaagtaaacaaattcaaaaatatattttctcaccggctaattcactgattgcatgataaacatgatgtatcattcttaatcatgtttatactacccc |
47423063 |
T |
|
| Q |
293 |
attggagaatcagaagactgagcttggggtggatcaattatttttcctgctgctgctgcttattatacaaacaactgagttgatgaaaataaggacaagt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47423062 |
attggagaatcagaagactgagcttggggtggatcaattatttttcctgctgctg------attatacaaagaactgagttgatgaaaataaggacaagt |
47422969 |
T |
|
| Q |
393 |
cctagaatccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttgca |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47422968 |
cctagaatccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttgcg |
47422869 |
T |
|
| Q |
493 |
cttctcttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttattactatttccttcaacattattgttgcttctgtttatta |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47422868 |
cttctcttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttattactatttccttcaacattattgttgcttctgtttatta |
47422769 |
T |
|
| Q |
593 |
cacttgtagtagacttgaggtttatgagtgccaacacttcttctc |
637 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47422768 |
cacttgtagtagacttgaggtttatgagtgccaacacttcatctc |
47422724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 539
Target Start/End: Original strand, 36127406 - 36127513
Alignment:
| Q |
432 |
atcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttgcacttctcttgtatcccaactcaaacatcccttcagagatt |
531 |
Q |
| |
|
||||||||| ||| | |||||||| || || || ||||| || ||||| || ||||||||||||||||||||||| ||||| ||||| |||| || ||| |
|
|
| T |
36127406 |
atcctttgtttttctgaaatacttgttgatattctcccacttctctttgcatctctttgcacttctcttgtatcctaactccaacattccttgtgaaatt |
36127505 |
T |
|
| Q |
532 |
ctctccca |
539 |
Q |
| |
|
|||||||| |
|
|
| T |
36127506 |
ctctccca |
36127513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 492
Target Start/End: Complemental strand, 12683339 - 12683295
Alignment:
| Q |
448 |
aaatacttatttatgttttcccatttttctttacacctctttgca |
492 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| |||||||||||| |
|
|
| T |
12683339 |
aaatacttgttaatgttttcccatttctctttgcacctctttgca |
12683295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University