View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11302_high_1 (Length: 894)
Name: NF11302_high_1
Description: NF11302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11302_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 320 - 467
Target Start/End: Complemental strand, 36645937 - 36645785
Alignment:
| Q |
320 |
tcacaagctagtattacccagctcggagaacataccagcatgccagacctttataaacacacacttgttccatattctagccaatgtggaacttaatgga |
419 |
Q |
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| T |
36645937 |
tcacaagctggtgttacgcagctcggcaaacatactagcatgccagacctttataaacacatacttgttccatattctagccaatgtgggacttaatgga |
36645838 |
T |
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| Q |
420 |
tcaaagatgg-----tgtagtattaagttggaatatagtttcttaaatggttt |
467 |
Q |
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| T |
36645837 |
ttcaagatggagcattgaagtgttaagttggaacatggtttcttaaatggttt |
36645785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 660 - 736
Target Start/End: Complemental strand, 36645451 - 36645375
Alignment:
| Q |
660 |
atatacctggtttagcttggagtaacatcaggcaacattataacttgctactgctgcttccttgggttctggttttg |
736 |
Q |
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| T |
36645451 |
atatacctggtttagcttagagtaacaacaagcaacgttatagcttgcgactgctgcttcatcaggttctggctttg |
36645375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 36646371 - 36646299
Alignment:
| Q |
228 |
aagttagcaaggacatgatcagttttgattatcagttaaaacaacggcagctttaggcagcttatttagcaaa |
300 |
Q |
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| T |
36646371 |
aagttagcaaggtcaggatcagttctgattctctgttaaaacaacaccagtgttaggcagcttatttagcaaa |
36646299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 52610686 - 52610618
Alignment:
| Q |
43 |
acagcatagagtacaaacttttataacatatgagatttcaacatgtgtggctaatgccaataacaacat |
111 |
Q |
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| T |
52610686 |
acagcatagagtgcaaacttttataacagatgagatttcaacatgtgtggctaatgccaataacaacat |
52610618 |
T |
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Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 23881375 - 23881429
Alignment:
| Q |
43 |
acagcatagagtacaaacttttataacatatgagatttcaacatgtgtggctaat |
97 |
Q |
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| T |
23881375 |
acagcatagagtacaaacttttataacagatgagatttcaacatgtgtggctaat |
23881429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 830 - 877
Target Start/End: Complemental strand, 29158000 - 29157952
Alignment:
| Q |
830 |
aataagtacaagatagttcaa-ttttgacttggattacaacataaaact |
877 |
Q |
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| T |
29158000 |
aataagtacaagatagttcaattttttacttggattacagcataaaact |
29157952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 31331009 - 31330946
Alignment:
| Q |
48 |
atagagtacaaacttttataacatatgagatttcaacatgtgtggctaatgccaataacaacat |
111 |
Q |
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| T |
31331009 |
atagattacaaatttttataacagatggaatttcaacacatgtggctaatgccaataacaacat |
31330946 |
T |
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