View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11302_high_2 (Length: 553)
Name: NF11302_high_2
Description: NF11302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11302_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 6259934 - 6260472
Alignment:
| Q |
1 |
catgtactgggaatcaagtgatttttcatgacaaaggtgtttcgattgaagcaattcttgaacagactaaaatgcttccgtggaattggttgcacgctaa |
100 |
Q |
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| T |
6259934 |
catgtactgggaatcaagtgatttttcatgacaaaggtgtttcaattgaagcaattcttgaacagactaaaatgcttccgtggaattggttgcacgctaa |
6260033 |
T |
|
| Q |
101 |
agctaatattttatttattaaaattttcaatggttaaccaatcctcttgcttgtttaggtttggtgtgtaatgcccgagtgtccggaaatatcacagnnn |
200 |
Q |
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| T |
6260034 |
agctaatattttatttattaaaattttcaatggttaaccaatcctcttgcttgtttaggtttggtgtgtaatgcccgagtgtccggaaatatcacagttt |
6260133 |
T |
|
| Q |
201 |
nnnnnccggcatctttgggtatatatgggtggccgtttctggtttgagcttgagcctgagaattagttagtaatttgtatcagtgttcggtttaagacgc |
300 |
Q |
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| T |
6260134 |
tttttccggcatctttgggtatatatgggtggccgtttctggtttgagcttgagcctgagaattagttagtaatttgtatcagtgttcggtttaagacgc |
6260233 |
T |
|
| Q |
301 |
tgtcgtgcaaggtatcacgattctgtatttgttaattcaacagtatcagtgctgttttatcagttaaggttgcagattttggcagagtagtttatggtag |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6260234 |
tgtcgtgcaaggtatcgcgattctgtatttgttaattcaacagtatcagtgctgttttatcagttaaggttgcagattttggcagagtagtttatggtag |
6260333 |
T |
|
| Q |
401 |
cttcttcatgtgaaccttcaagcaattttccttctgttgtttgagtttcctggtatcagtccccaggttttggtgctgtatggatttattcttgtgttta |
500 |
Q |
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| T |
6260334 |
cttcttcatgtgaaccttcaagcaattttccttctgttgtttgagtttcctggtatcagtccccaggttttggtgctgtatggatttattcttgtgttta |
6260433 |
T |
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| Q |
501 |
tttgctataacaggtagcaatttctaagcattgcaactg |
539 |
Q |
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| T |
6260434 |
tttgctataacaggtagcaatttctaagcattgcaactg |
6260472 |
T |
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