View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11302_high_4 (Length: 459)

Name: NF11302_high_4
Description: NF11302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11302_high_4
NF11302_high_4
[»] chr8 (9 HSPs)
chr8 (17-449)||(8690606-8691038)
chr8 (41-336)||(8704991-8705294)
chr8 (41-265)||(8740138-8740370)
chr8 (188-335)||(8722069-8722216)
chr8 (41-162)||(14372433-14372554)
chr8 (188-267)||(8723482-8723561)
chr8 (193-335)||(8738501-8738643)
chr8 (40-135)||(8738729-8738824)
chr8 (41-183)||(8723586-8723729)


Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Complemental strand, 8691038 - 8690606
Alignment:
Q  17 cagtatccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8691038 cagtatccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatca 8690939  T
Q  117 aagaacaagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaactt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8690938 aagaacaagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaactt 8690839  T
Q  217 gcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctcttcatctgttggtcgg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  8690838 gcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcgg 8690739  T
Q  317 aatctgaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgcnnnnnnngtagcaacaaaat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  8690738 aatctgaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgctttttttgtagcaacaaaat 8690639  T
Q  417 gagacaaagagagactttctaataccacctatg 449  Q
    |||||||||||||||||||||||||||||||||    
T  8690638 gagacaaagagagactttctaataccacctatg 8690606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 41 - 336
Target Start/End: Complemental strand, 8705294 - 8704991
Alignment:
Q  41 ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa 140  Q
    |||||||||||||| || || || || |||||   |||||| || ||||||||||| || ||||  |||||||  |  ||| |||||||||||||| |||    
T  8705294 ttaaaccttttactcttggcatacttataatcaataggacacaaaaaaaaccattctgggtcatctgattttacaaccgaaaaagctgaaaaagatgaaa 8705195  T
Q  141 aacattagaaagattgcatttttgtgagaaaataatgatggg---gtttgtt-----acctggtaaatcccaaggttcgaacttgcatacatcaacttca 232  Q
    ||||||| |||| |||||||||| |||||||||||||| |||   |||||||     ||||||||| |||||||||||  | ||||||||||||||||||    
T  8705194 aacattaaaaaggttgcatttttatgagaaaataatgaagggtttgtttgtttttttacctggtaagtcccaaggttcatagttgcatacatcaacttca 8705095  T
Q  233 gctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacag 332  Q
    |||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8705094 gctataacattgtttacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacag 8704995  T
Q  333 gaac 336  Q
    ||||    
T  8704994 gaac 8704991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 41 - 265
Target Start/End: Complemental strand, 8740370 - 8740138
Alignment:
Q  41 ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa 140  Q
    |||||||||||||| ||||| || ||||| ||   |||||| ||||||||||||||  | ||||  ||||||||||  |||| ||||||||||||| |||    
T  8740370 ttaaaccttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattttatcactgaacgagctgaaaaagatgaaa 8740271  T
Q  141 aacattagaaagattgcatttttgtgagaaaataatgatggggtttgtt--------acctggtaaatcccaaggttcgaacttgcatacatcaacttca 232  Q
    |||||||  ||| ||| |||  | | ||||||||||||| |||||||||        ||||||||| |||||||||||| ||||||||||||||||||||    
T  8740270 aacattaacaaggttgaattactttaagaaaataatgatagggtttgtttggtttttacctggtaagtcccaaggttcgtacttgcatacatcaacttca 8740171  T
Q  233 gctataacattgttgacaatggaatcattacca 265  Q
    |||||||||||||| ||||||||||||||||||    
T  8740170 gctataacattgtttacaatggaatcattacca 8740138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 188 - 335
Target Start/End: Complemental strand, 8722216 - 8722069
Alignment:
Q  188 ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagt 287  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||||| |||||||| ||||     ||||| |||||||||        ||||||||    
T  8722216 ttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagt 8722117  T
Q  288 ggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaa 335  Q
     |||||||||||||| |||||||||  |||||||||||||||||||||    
T  8722116 agtttacaagctcttgatctgttggatggaatctgaatccaacaggaa 8722069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 14372433 - 14372554
Alignment:
Q  41 ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa 140  Q
    |||||||||||||| ||||| || ||||||||   |||||| |||||||||||||| || ||||  ||||||| ||  |||||||||||||||||| ||     
T  14372433 ttaaaccttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaagatgaag 14372532  T
Q  141 aacattagaaagattgcatttt 162  Q
    ||||||| |||| |||||||||    
T  14372533 aacattaaaaaggttgcatttt 14372554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 8723561 - 8723482
Alignment:
Q  188 ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaag 267  Q
    ||||||||||| ||||| |||||||||||||  | |||||||||||||||||||||||| |||||||  |||||||||||    
T  8723561 ttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaag 8723482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 335
Target Start/End: Complemental strand, 8738643 - 8738501
Alignment:
Q  193 tggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggttt 292  Q
    |||||| |||||||| || ||| |||| ||||||||||| ||||| |||||||| |||  |||| ||||||||||||||        ||| ||||| ||     
T  8738643 tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagtgatta 8738544  T
Q  293 acaagctcttcatctgttggtcggaatctgaatccaacaggaa 335  Q
    || || ||||||| ||||||||||||||||||||| |||||||    
T  8738543 actagttcttcatttgttggtcggaatctgaatccgacaggaa 8738501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 8738824 - 8738729
Alignment:
Q  40 gttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaaga 135  Q
    ||||||| ||||||| |||||||| |||||||| | |||||| |||||||||||||| || ||||  |||||||| |  |||| |||||| |||||    
T  8738824 gttaaactttttactctttgcgtacttgtaatcacaaggacacaagaaaaaccattccgggtcatgtgattttattatcgaacgagctgacaaaga 8738729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 8723729 - 8723586
Alignment:
Q  41 ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa 140  Q
    |||||||||||||| ||||| || ||||| ||   ||| || ||||||||||||||  | ||||  ||||||||||  |||| |||||||||| | ||||    
T  8723729 ttaaaccttttactctttgcatacttgtattcaatagggcacaagaaaaaccattcttggtcatcagattttatcaccgaacgagctgaaaaacaacaaa 8723630  T
Q  141 aaca-ttagaaagattgcatttttgtgagaaaataatgatgggg 183  Q
    |||| | | ||| ||  ||||||||||  |||||||||||||||    
T  8723629 aacagtaataaaaatcacatttttgtgccaaaataatgatgggg 8723586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University