View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11302_high_6 (Length: 402)
Name: NF11302_high_6
Description: NF11302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11302_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 92 - 255
Target Start/End: Original strand, 10818001 - 10818164
Alignment:
| Q |
92 |
gtattatatactcccttggtccctatatatatggtatgtgtcttaattttcccacaatgtgatatcgtaaaatgtgttattaatgtctcttgtgatgcag |
191 |
Q |
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| T |
10818001 |
gtattatatactccctcagtccctgtatatatggtatgtgtcttaattttcccacaatgtgatatcgtaaaatgtgttattaatgtctcttgtgatgcag |
10818100 |
T |
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| Q |
192 |
attgaatgcctagtagatcagatatgcaacatgacaataatgtcactagacacatggtatgttt |
255 |
Q |
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| T |
10818101 |
attgaatgcctagtagatcacatatgcaacgtgacaataatgtcactagacacatggtatgttt |
10818164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 277 - 387
Target Start/End: Original strand, 10818472 - 10818581
Alignment:
| Q |
277 |
atgattatatattcttaatatttaaatttggtttgaaaaatatgttcctgattattcttctttgacaccagagtttgctctgcaatgcatgtctctcgct |
376 |
Q |
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| T |
10818472 |
atgattatatattcttaatatttaaatttggtttgaaaaatatgttcctgattattcttctttgacaccagagtttgctctgc-atgcatgtctctcgct |
10818570 |
T |
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| Q |
377 |
accatatatat |
387 |
Q |
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| T |
10818571 |
accatatatat |
10818581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10817899 - 10817942
Alignment:
| Q |
1 |
taactaaatcctctaatttattcttttttggtattatatatttc |
44 |
Q |
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| T |
10817899 |
taactaaatcctctaatttattcttttttggtattatatttttc |
10817942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 13568487 - 13568436
Alignment:
| Q |
5 |
taaatcctctaatttattcttttttggtattatatatttcaatatgcatatg |
56 |
Q |
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| T |
13568487 |
taaatcttctaatttattcttttttcttattatatatttcaatatgcatatg |
13568436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 13573033 - 13572982
Alignment:
| Q |
5 |
taaatcctctaatttattcttttttggtattatatatttcaatatgcatatg |
56 |
Q |
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| T |
13573033 |
taaatcttctaatttattcttttttcttattatatatttcaatatgcatatg |
13572982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 13575781 - 13575833
Alignment:
| Q |
5 |
taaatcctctaatttattc-ttttttggtattatatatttcaatatgcatatg |
56 |
Q |
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| T |
13575781 |
taaatcctctaatttattctttttttattattatatatttcgatatgcatatg |
13575833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 13578320 - 13578372
Alignment:
| Q |
5 |
taaatcctctaatttattc-ttttttggtattatatatttcaatatgcatatg |
56 |
Q |
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| T |
13578320 |
taaatcctctaatttattctttttttattattatatatttcgatatgcatatg |
13578372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 13568696 - 13568748
Alignment:
| Q |
5 |
taaatcctctaatttattc-ttttttggtattatatatttcaatatgcatatg |
56 |
Q |
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|||||||||||||||| || |||||| ||||||||||||| ||||||||||| |
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| T |
13568696 |
taaatcctctaatttactctttttttcttattatatatttcgatatgcatatg |
13568748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 13573242 - 13573294
Alignment:
| Q |
5 |
taaatcctctaatttattc-ttttttggtattatatatttcaatatgcatatg |
56 |
Q |
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|||||||||||||||| || |||||| ||||||||||||| ||||||||||| |
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| T |
13573242 |
taaatcctctaatttactctttttttcttattatatatttcgatatgcatatg |
13573294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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