View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11302_high_9 (Length: 278)
Name: NF11302_high_9
Description: NF11302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11302_high_9 |
 | |
|
| [»] scaffold0073 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 7085835 - 7086088
Alignment:
| Q |
17 |
caccaaaaccatacacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7085835 |
caccaaaaccatacacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaatctgttactcat |
7085934 |
T |
|
| Q |
117 |
cacatgcttgtctagctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7085935 |
cacatgcttgtctagctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttg |
7086034 |
T |
|
| Q |
217 |
tagtgaattatcggtggcctgaatgaatgatgcaaatgtgcaagtccctatgct |
270 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7086035 |
tagtgaattattggtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
7086088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 7045249 - 7044998
Alignment:
| Q |
19 |
ccaaaaccatacacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcatca |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7045249 |
ccaaagccatacacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacatagcctaatgcactttgaaacctgttactcatca |
7045150 |
T |
|
| Q |
119 |
catgcttgtctagctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgta |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7045149 |
catgcttgtctagctttgataatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgca |
7045050 |
T |
|
| Q |
219 |
gtgaattatcggtggcctgaatgaatgatgcaaatgtgcaagtccctatgct |
270 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7045049 |
gtgaattattggtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
7044998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 7000954 - 7000701
Alignment:
| Q |
17 |
caccaaaaccatacacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7000954 |
caccaaaaccatacacatcacatttctcattgacccttaagatttgacaggctagttctggtgctacataacctaaagcactttgaaacctgttactcat |
7000855 |
T |
|
| Q |
117 |
cacatgcttgtctagctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7000854 |
cacatgcttgtctagctttgttaatagcctagctaacccgaaatctgatatctttgcgttgaagttttcgtcaagtaagatgttgcttggttttatgttg |
7000755 |
T |
|
| Q |
217 |
tagtgaattatcggtggcctgaatgaatgatgcaaatgtgcaagtccctatgct |
270 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7000754 |
tagtgaatgattggtggtctgaatgaatgatgcaaatgtgcaagtccctttgct |
7000701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 7046825 - 7046572
Alignment:
| Q |
17 |
caccaaaaccatacacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7046825 |
caccaaaaccatacacatcacatttctcattgacccttaagatttgacaggctagttctggtgctacataacctaaagcactttgaaacctgttactcat |
7046726 |
T |
|
| Q |
117 |
cacatgcttgtctagctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7046725 |
cacatgcttgtctagctttgttaatagcctagctaacccgaaatctgatatctttgcgttgaagttttcgtcaagtaagatgttgcttggttttatgttg |
7046626 |
T |
|
| Q |
217 |
tagtgaattatcggtggcctgaatgaatgatgcaaatgtgcaagtccctatgct |
270 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7046625 |
tagtgaatgattggtggtctgaatgaatgatgcaaatgtgcaagtccctttgct |
7046572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 6995526 - 6995609
Alignment:
| Q |
17 |
caccaaaaccatacacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcacttt |
100 |
Q |
| |
|
||||||| |||||| ||| | ||||| |||||||||||||||||||||| || ||||| || |||||| |||||||||||| |
|
|
| T |
6995526 |
caccaaatccatacgcattaactttctggttgacccttaagctctgacaagataattcagtggccacataatctaatgcacttt |
6995609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 14082 - 13831
Alignment:
| Q |
19 |
ccaaaaccatacacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcatca |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14082 |
ccaaagccatacacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacatagcctaatgcactttgaaacctgttactcatca |
13983 |
T |
|
| Q |
119 |
catgcttgtctagctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgta |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13982 |
catgcttgtctagctttgataatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgca |
13883 |
T |
|
| Q |
219 |
gtgaattatcggtggcctgaatgaatgatgcaaatgtgcaagtccctatgct |
270 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13882 |
gtgaattattggtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
13831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 15038229 - 15038201
Alignment:
| Q |
19 |
ccaaaaccatacacatcacatttctcatt |
47 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15038229 |
ccaaaaccatacacatcacatttctcatt |
15038201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University