View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11302_low_3 (Length: 477)
Name: NF11302_low_3
Description: NF11302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11302_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Complemental strand, 2692363 - 2691895
Alignment:
| Q |
17 |
ggttgtacgaggatcacagcattgaagggtgatcagagtaatggtagttttggcgaggatggtttcttggagcgtacgtatatgaagttacctgactttg |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692363 |
ggttgtacgaggatcacagcattgaagggtaatcagagtaatggtagttttggcgaggatggtttcttggagcgtacgtatatgaagttacctgactttg |
2692264 |
T |
|
| Q |
117 |
cacgtgtggttgttactaatgattgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggta |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692263 |
cacatgtggttgttactaatgattgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggta |
2692164 |
T |
|
| Q |
217 |
tggagatttggttgatgttcaacagtttgaacgtggcgatggaaatacattgcatattcgtcttgatcattctgatttaggtaaggtgcttcaaagggtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2692163 |
tggagatttggttgatgttcaacagtttgaacgtggtgatggaaatacattgcatattcgtcttgctcattctgatttaggtaaggtgcttcaaagggtt |
2692064 |
T |
|
| Q |
317 |
ccttaagctttgtttccatgtatatggaacttcaattttaattatcatttatcactagcactattttttcatgtatgg---------------ttcaatt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2692063 |
ccttaagctttgtttccatgtatatggaacttcaattttaattatcatttatcactagcactattttttcatgtatggttcttgagtaactctttcaatt |
2691964 |
T |
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| Q |
402 |
gataatatatannnnnnnnncattgtttctgaagatgatgagtctcagatttttacaagcttctgtgctg |
471 |
Q |
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| T |
2691963 |
gataatatat-tttttttttcattgtttctgaagatgatgagtctcagatttttacaagcttctgtgctg |
2691895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 2700059 - 2699779
Alignment:
| Q |
20 |
tgtacgaggatcacagcattgaagggtgatcagagtaatggtagttttggcgaggatggtttcttggagcgtacgtatatgaagttacctgactttgcac |
119 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |||| | ||||||||||||||| ||||| | |
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| T |
2700059 |
tgtaggaggatgacagcattgaagggtgatcagaggaatggtagttttggtgaggatggttttttggtgcgtgggagtatgaagttacctgattttgcgc |
2699960 |
T |
|
| Q |
120 |
gtgtggttgttactaatgattgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatgg |
219 |
Q |
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| T |
2699959 |
gtgtggttgatacgaaagattgtaaaggtaattgtttacagaatggttcttgtactgcttatgcagaagttattggaattggttgtatggtttggtatgg |
2699860 |
T |
|
| Q |
220 |
agatttggttgatgttcaacagtttgaacgtggcgatggaaatacattgcatattcgtcttgatcattctgatttaggtaa |
300 |
Q |
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||||||||||||| ||| ||| ||| ||| ||| || ||||| | |||| |||||||| | | |||||||||||||||| |
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| T |
2699859 |
agatttggttgatattctacactttcaacatggagaaggaaacgctctgcacattcgtctcgcttattctgatttaggtaa |
2699779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 14521434 - 14521101
Alignment:
| Q |
20 |
tgtacgaggatcacagcattgaagggtgatcagagtaatggtagttttggcgaggatggtttcttggagcgtacgtatatgaagttacctgactttgcac |
119 |
Q |
| |
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|||||||||| |||||||||||||||||||||| | || | | |||| ||||||||||||||| ||||||||| |||||||||||| |||||||||| |
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| T |
14521434 |
tgtacgaggaagacagcattgaagggtgatcagacaagtgatggatttgacgaggatggtttctttgagcgtacgagtatgaagttacccgactttgcac |
14521335 |
T |
|
| Q |
120 |
gtgtggttgttactaatgattgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatgg |
219 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| ||||| |||| |
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| T |
14521334 |
gtgtggttgatactaaggattgtgaaggtaattgtttggagaatgcttcttgtactgcttatgcagaagtaactggaattggttgtatggtttggcatgg |
14521235 |
T |
|
| Q |
220 |
agatttggttgatgttcaacagtttgaacgtggcgatggaaatacattgcatattcgtcttgatcattctgatttaggtaaggtgcttcaaagggttcct |
319 |
Q |
| |
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||||||||| ||||||||||| || | ||| | || |||||| | || |||||||||||| ||| ||||||||||||||| | | ||||||||||||| |
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| T |
14521234 |
agatttggtcgatgttcaacacttaggacgcgatgaaggaaattcgttatatattcgtcttgctcagtctgatttaggtaagatacatcaaagggttcct |
14521135 |
T |
|
| Q |
320 |
taagctttgtttccatgtatatggaacttcaatt |
353 |
Q |
| |
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| |||||||||||||||||||| || |||||||| |
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| T |
14521134 |
ttagctttgtttccatgtatattgatcttcaatt |
14521101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 36289235 - 36289336
Alignment:
| Q |
137 |
gattgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagatttggttgatgttc |
236 |
Q |
| |
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||||||||||| |||||| || |||||| |||||||||||| |||| | | | ||||||||||| |||||| ||||| |||| || || |||||| ||| |
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| T |
36289235 |
gattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagttgattttc |
36289334 |
T |
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| Q |
237 |
aa |
238 |
Q |
| |
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|| |
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| T |
36289335 |
aa |
36289336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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