View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11302_low_4 (Length: 459)
Name: NF11302_low_4
Description: NF11302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11302_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Complemental strand, 8691038 - 8690606
Alignment:
| Q |
17 |
cagtatccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691038 |
cagtatccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatca |
8690939 |
T |
|
| Q |
117 |
aagaacaagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaactt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8690938 |
aagaacaagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaactt |
8690839 |
T |
|
| Q |
217 |
gcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctcttcatctgttggtcgg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8690838 |
gcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcgg |
8690739 |
T |
|
| Q |
317 |
aatctgaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgcnnnnnnngtagcaacaaaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8690738 |
aatctgaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgctttttttgtagcaacaaaat |
8690639 |
T |
|
| Q |
417 |
gagacaaagagagactttctaataccacctatg |
449 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
8690638 |
gagacaaagagagactttctaataccacctatg |
8690606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 41 - 336
Target Start/End: Complemental strand, 8705294 - 8704991
Alignment:
| Q |
41 |
ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa |
140 |
Q |
| |
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|||||||||||||| || || || || ||||| |||||| || ||||||||||| || |||| ||||||| | ||| |||||||||||||| ||| |
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| T |
8705294 |
ttaaaccttttactcttggcatacttataatcaataggacacaaaaaaaaccattctgggtcatctgattttacaaccgaaaaagctgaaaaagatgaaa |
8705195 |
T |
|
| Q |
141 |
aacattagaaagattgcatttttgtgagaaaataatgatggg---gtttgtt-----acctggtaaatcccaaggttcgaacttgcatacatcaacttca |
232 |
Q |
| |
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||||||| |||| |||||||||| |||||||||||||| ||| ||||||| ||||||||| ||||||||||| | |||||||||||||||||| |
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| T |
8705194 |
aacattaaaaaggttgcatttttatgagaaaataatgaagggtttgtttgtttttttacctggtaagtcccaaggttcatagttgcatacatcaacttca |
8705095 |
T |
|
| Q |
233 |
gctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacag |
332 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8705094 |
gctataacattgtttacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacag |
8704995 |
T |
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| Q |
333 |
gaac |
336 |
Q |
| |
|
|||| |
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|
| T |
8704994 |
gaac |
8704991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 41 - 265
Target Start/End: Complemental strand, 8740370 - 8740138
Alignment:
| Q |
41 |
ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa |
140 |
Q |
| |
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|||||||||||||| ||||| || ||||| || |||||| |||||||||||||| | |||| |||||||||| |||| ||||||||||||| ||| |
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| T |
8740370 |
ttaaaccttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattttatcactgaacgagctgaaaaagatgaaa |
8740271 |
T |
|
| Q |
141 |
aacattagaaagattgcatttttgtgagaaaataatgatggggtttgtt--------acctggtaaatcccaaggttcgaacttgcatacatcaacttca |
232 |
Q |
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||||||| ||| ||| ||| | | ||||||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
8740270 |
aacattaacaaggttgaattactttaagaaaataatgatagggtttgtttggtttttacctggtaagtcccaaggttcgtacttgcatacatcaacttca |
8740171 |
T |
|
| Q |
233 |
gctataacattgttgacaatggaatcattacca |
265 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
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| T |
8740170 |
gctataacattgtttacaatggaatcattacca |
8740138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 188 - 335
Target Start/End: Complemental strand, 8722216 - 8722069
Alignment:
| Q |
188 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagt |
287 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||| ||||| ||||||||| |||||||| |
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| T |
8722216 |
ttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagt |
8722117 |
T |
|
| Q |
288 |
ggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaa |
335 |
Q |
| |
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|||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
8722116 |
agtttacaagctcttgatctgttggatggaatctgaatccaacaggaa |
8722069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 14372433 - 14372554
Alignment:
| Q |
41 |
ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa |
140 |
Q |
| |
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|||||||||||||| ||||| || |||||||| |||||| |||||||||||||| || |||| ||||||| || |||||||||||||||||| || |
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| T |
14372433 |
ttaaaccttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaagatgaag |
14372532 |
T |
|
| Q |
141 |
aacattagaaagattgcatttt |
162 |
Q |
| |
|
||||||| |||| ||||||||| |
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| T |
14372533 |
aacattaaaaaggttgcatttt |
14372554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 8723561 - 8723482
Alignment:
| Q |
188 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaag |
267 |
Q |
| |
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||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
8723561 |
ttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaag |
8723482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 335
Target Start/End: Complemental strand, 8738643 - 8738501
Alignment:
| Q |
193 |
tggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggttt |
292 |
Q |
| |
|
|||||| |||||||| || ||| |||| ||||||||||| ||||| |||||||| ||| |||| |||||||||||||| ||| ||||| || |
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| T |
8738643 |
tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagtgatta |
8738544 |
T |
|
| Q |
293 |
acaagctcttcatctgttggtcggaatctgaatccaacaggaa |
335 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||| ||||||| |
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| T |
8738543 |
actagttcttcatttgttggtcggaatctgaatccgacaggaa |
8738501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 8738824 - 8738729
Alignment:
| Q |
40 |
gttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaaga |
135 |
Q |
| |
|
||||||| ||||||| |||||||| |||||||| | |||||| |||||||||||||| || |||| |||||||| | |||| |||||| ||||| |
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| T |
8738824 |
gttaaactttttactctttgcgtacttgtaatcacaaggacacaagaaaaaccattccgggtcatgtgattttattatcgaacgagctgacaaaga |
8738729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 8723729 - 8723586
Alignment:
| Q |
41 |
ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa |
140 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || ||| || |||||||||||||| | |||| |||||||||| |||| |||||||||| | |||| |
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| T |
8723729 |
ttaaaccttttactctttgcatacttgtattcaatagggcacaagaaaaaccattcttggtcatcagattttatcaccgaacgagctgaaaaacaacaaa |
8723630 |
T |
|
| Q |
141 |
aaca-ttagaaagattgcatttttgtgagaaaataatgatgggg |
183 |
Q |
| |
|
|||| | | ||| || |||||||||| ||||||||||||||| |
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| T |
8723629 |
aacagtaataaaaatcacatttttgtgccaaaataatgatgggg |
8723586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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