View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11302_low_5 (Length: 455)

Name: NF11302_low_5
Description: NF11302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11302_low_5
NF11302_low_5
[»] chr3 (12 HSPs)
chr3 (20-451)||(36327849-36328280)
chr3 (76-387)||(36333744-36334055)
chr3 (82-440)||(36321079-36321437)
chr3 (277-441)||(36309764-36309927)
chr3 (268-410)||(36313859-36313998)
chr3 (278-380)||(30201147-30201249)
chr3 (118-187)||(36326051-36326120)
chr3 (369-410)||(36336750-36336791)
chr3 (279-311)||(29751894-29751926)
chr3 (277-376)||(30227326-30227425)
chr3 (277-311)||(30223140-30223174)
chr3 (102-187)||(36313699-36313784)
[»] chr5 (1 HSPs)
chr5 (288-410)||(16053597-16053719)
[»] chr1 (1 HSPs)
chr1 (270-312)||(16955661-16955703)


Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 20 - 451
Target Start/End: Original strand, 36327849 - 36328280
Alignment:
Q  20 actgccactgtaaaatttatattaaaaagaagtattaaaatttgcttcatcaaaaaatacaattgaatgcaagaataaaataagatattggtattaatta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36327849 actgccactgtaaaatttatattaaaaagaagtattaaaatttgcttcatcaaaaaatacaattgaatgcaagaataaaataagattttggtattaatta 36327948  T
Q  120 cttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgtcttcgagatgactgctacttcttttgacagcattgcaacatatc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36327949 cttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgtcttcgagatgactgctacttcttttgacagcattgcaacatatc 36328048  T
Q  220 tttgccaaatccacgtaagcactgggtgaattacgtgtgcagcgcatacgaatagttcgccacatgagaggatccttgcaaacgttccaccattgcgggg 319  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36328049 tttgccaaatccacataagcactgggtgaattacgtgtgcagcgcatacgaatagttcgccacatgacaggatccttgcaaacgttccaccattgcgggg 36328148  T
Q  320 acactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttgctgtcaaatcaatcggaagatcaaaccaatttggcactgttat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36328149 acactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttgctgtcaaatcaatcggaagatcaaaccaatttggcactgttat 36328248  T
Q  420 tctgtcactttcctcttccattcttctcactc 451  Q
    |||||||||||||||||||||| || ||||||    
T  36328249 tctgtcactttcctcttccattgttgtcactc 36328280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 76 - 387
Target Start/End: Original strand, 36333744 - 36334055
Alignment:
Q  76 atacaattgaatgcaagaataaaataagatattggtattaattacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgt 175  Q
    ||||| ||||||||| ||||||| |||||| |||||||||||||||  ||||||||| | || |||||||||  | |||||||||||| |||||  ||||    
T  36333744 atacagttgaatgcaggaataaattaagattttggtattaattactgatcagctatgcatttaaggagatcatcgatgcaaaaacgcttaatatcaatgt 36333843  T
Q  176 cttcgagatgactgctacttcttttgacagcattgcaacatatctttgccaaatccacgtaagcactgggtgaattacgtgtgcagcgcatacgaatagt 275  Q
    |||| |||||||  | ||||  ||  | |||| ||||||| |||||   ||||||||| ||||||  ||||||  ||||  || ||| ||| ||||||||    
T  36333844 cttcaagatgaccacaacttagttcaaaagcaatgcaacaaatcttccacaaatccacataagcatagggtgatatacggatgtagcacatgcgaatagt 36333943  T
Q  276 tcgccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgttt 375  Q
     ||||||||||||||||||||||||| |||||||||||| ||  |||||||||| |||||| ||| |||||| |||||||||||||||||||||||||||    
T  36333944 gcgccacatgagaggatccttgcaaatgttccaccattgtggacacactcggcaagcactcgtcacaatttccaacgtaccaagcctctgaaggatgttt 36334043  T
Q  376 gctgtcaaatca 387  Q
    ||||||||||||    
T  36334044 gctgtcaaatca 36334055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 82 - 440
Target Start/End: Original strand, 36321079 - 36321437
Alignment:
Q  82 ttgaatgcaagaataaaataagatattggtattaattacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgtcttcga 181  Q
    ||||||||| ||| ||| | |||| |||||||||||||||| || |||||| | ||||||  |||| |||||||| ||  ||||||||  |||| ||| |    
T  36321079 ttgaatgcaggaacaaattgagattttggtattaattacttgtcggctatgcatttgagggtatcattggtgcaataatactcaatatcaatgttttcaa 36321178  T
Q  182 gatgactgctacttcttttgacagcattgcaacatatctttgccaaatccacgtaagcactgggtgaattacgtgtgcagcgcatacgaatagttcgcca 281  Q
    |||||| || ||| | ||||| | |||||||||| |||||  |||||| |    |||||  |||||| || |    | ||  |||| ||||| | | |||    
T  36321179 gatgaccgcaactccgtttgataacattgcaacaaatcttcaccaaattctgaaaagcatagggtgacttcctgacgtaggacatatgaataatgcacca 36321278  T
Q  282 catgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttgctgtc 381  Q
    |||||| ||||||||||||| |||| ||||||| ||| | |||||||| |||||| ||| |||||||||||||||||||||||||||||||||| |||||    
T  36321279 catgagtggatccttgcaaatgttcaaccattgtgggcatactcggcaagcactcgtcacaatttcaaacgtaccaagcctctgaaggatgttttctgtc 36321378  T
Q  382 aaatcaatcggaagatcaaaccaatttggcactgttattctgtcactttcctcttccat 440  Q
    |||||| | |||||||||| |||||||||  ||||| | || |||||||||||||||||    
T  36321379 aaatcacttggaagatcaagccaatttggtcctgttgtgctctcactttcctcttccat 36321437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 277 - 441
Target Start/End: Original strand, 36309764 - 36309927
Alignment:
Q  277 cgccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttg 376  Q
    |||||||| |||||||||||||||| |||||||||||||||  ||||||| ||||||||| ||| ||||||||||| ||||||||| |||||||||||||    
T  36309764 cgccacattagaggatccttgcaaatgttccaccattgcggacacactcg-catgcactcgtcacaatttcaaacgcaccaagcctatgaaggatgtttg 36309862  T
Q  377 ctgtcaaatcaatcggaagatcaaaccaatttggcactgttattctgtcactttcctcttccatt 441  Q
    |||||||||| || |||||||||| |||||| ||| || || | || || |||||| ||||||||    
T  36309863 ctgtcaaatctataggaagatcaagccaattcggccctcttgtgctttccctttccacttccatt 36309927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 410
Target Start/End: Original strand, 36313859 - 36313998
Alignment:
Q  268 cgaatagttcgccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaa 367  Q
    |||||||| |||||||||||||||||||||||||  ||| ||||||| | | | || |  ||||||||| ||| ||||||||   |||||||||||||||    
T  36313859 cgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacaacatgcactcgtcacaatttcaa---taccaagcctctgaa 36313955  T
Q  368 ggatgtttgctgtcaaatcaatcggaagatcaaaccaatttgg 410  Q
    | |||||| ||||||||||| | |||||||||| |||||||||    
T  36313956 gaatgttttctgtcaaatcacttggaagatcaagccaatttgg 36313998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 380
Target Start/End: Complemental strand, 30201249 - 30201147
Alignment:
Q  278 gccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttgc 377  Q
    |||||||||||||||||||||||| |||||||||| | ||  ||||| | ||||||||  ||| ||||||||  |||| |||||| ||||| |||||| |    
T  30201249 gccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcctttgaagaatgttttc 30201150  T
Q  378 tgt 380  Q
    |||    
T  30201149 tgt 30201147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 36326051 - 36326120
Alignment:
Q  118 tacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgtcttcgagatgac 187  Q
    ||||| || |||||| | |||||||||||| |||||||||||||||||||||  ||| |||| |||||||    
T  36326051 tacttgtcggctatgcatttgaggagatcattggtgcaaaaacgctcaatatcaatgacttcaagatgac 36326120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 36336750 - 36336791
Alignment:
Q  369 gatgtttgctgtcaaatcaatcggaagatcaaaccaatttgg 410  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  36336750 gatgtttgctgtcaaatcactcggaagatcaagccaatttgg 36336791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 29751926 - 29751894
Alignment:
Q  279 ccacatgagaggatccttgcaaacgttccacca 311  Q
    |||||||||||||||||||||||||||||||||    
T  29751926 ccacatgagaggatccttgcaaacgttccacca 29751894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 376
Target Start/End: Complemental strand, 30227425 - 30227326
Alignment:
Q  277 cgccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttg 376  Q
    ||||||||||||||||||||||||| ||||||| || | ||  ||||| | ||||||||  ||| ||| || |  ||||||||||| ||||| |||||||    
T  30227425 cgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagcctttgaagaatgtttg 30227326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 311
Target Start/End: Complemental strand, 30223174 - 30223140
Alignment:
Q  277 cgccacatgagaggatccttgcaaacgttccacca 311  Q
    ||||||||||||||||||||||||| |||||||||    
T  30223174 cgccacatgagaggatccttgcaaatgttccacca 30223140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 36313699 - 36313784
Alignment:
Q  102 agatattggtattaattacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgtcttcgagatgac 187  Q
    |||| |||||||||||||||| ||||||||| | ||||||| ||||  ||||||| ||  ||||||||  |||||||  |||||||    
T  36313699 agattttggtattaattacttatcagctatgcatttgaggatatcatcggtgcaataatactcaatattaatgtctttaagatgac 36313784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 288 - 410
Target Start/End: Original strand, 16053597 - 16053719
Alignment:
Q  288 aggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttgctgtcaaatca 387  Q
    |||||||||||||| |||||||||  | ||| |||||| |||||||||  | | ||||||||| | |||||||||||||||||| |||| |||||||||     
T  16053597 aggatccttgcaaatgttccaccaaagagggcacactccgcatgcacttgttaaaatttcaaatgcaccaagcctctgaaggatatttgatgtcaaatct 16053696  T
Q  388 atcggaagatcaaaccaatttgg 410  Q
     | |||||||||| |||||||||    
T  16053697 ctaggaagatcaagccaatttgg 16053719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 16955661 - 16955703
Alignment:
Q  270 aatagttcgccacatgagaggatccttgcaaacgttccaccat 312  Q
    |||||| |||||||||||||||||||||||||  |||||||||    
T  16955661 aatagtgcgccacatgagaggatccttgcaaatattccaccat 16955703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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