View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11302_low_8 (Length: 381)
Name: NF11302_low_8
Description: NF11302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11302_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 28475044 - 28475225
Alignment:
| Q |
15 |
agaggtttgaatcctttatcaaaaactaggatttatgtttcataggttatggaatatgtatgctacattttattgactgtgactaatacaaaagttgttt |
114 |
Q |
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| T |
28475044 |
agaggtttgaatcctttatcaaaaactaggatttatgtttcataggttatggaatatgtatggtacatttaattgactgtgactaatacaaaagttg-tt |
28475142 |
T |
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| Q |
115 |
tttctttgtccatgatgttcttgatttgactgtttgacttataacctaaagagacagagtttaaatctcctcgtagatagttg |
197 |
Q |
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| T |
28475143 |
tttctttgtccatgatgtgcttgatttgactgtttgacttataacctaaagggacagagtttaaatctcctcgtagatagttg |
28475225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 28475329 - 28475397
Alignment:
| Q |
294 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggc |
362 |
Q |
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| T |
28475329 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggc |
28475397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 28466779 - 28466845
Alignment:
| Q |
294 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgg |
360 |
Q |
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| T |
28466779 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacaccggtgg |
28466845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 28466623 - 28466710
Alignment:
| Q |
15 |
agaggtttgaatcctttatcaaaaactaggatttatgtttcataggttatggaatatgtatgctacattttattgactgtgactaatac |
103 |
Q |
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| T |
28466623 |
agaggtttgaatcctttattaaac-ctaggaattatgtttgatatgttatggaataagcatggtacattttattgactgtgactaatac |
28466710 |
T |
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