View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11302_low_9 (Length: 380)
Name: NF11302_low_9
Description: NF11302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11302_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 47423072 - 47422724
Alignment:
| Q |
18 |
atactaccccattggagaatcagaagactgagcttggggtggatcaattatttttcctgctgctgctgcttattatacaaacaactgagttgatgaaaat |
117 |
Q |
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| T |
47423072 |
atactaccccattggagaatcagaagactgagcttggggtggatcaattatttttcctgctgctg------attatacaaagaactgagttgatgaaaat |
47422979 |
T |
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| Q |
118 |
aaggacaagtcctagaatccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttaca |
217 |
Q |
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| T |
47422978 |
aaggacaagtcctagaatccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttaca |
47422879 |
T |
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| Q |
218 |
cctctttgcacttctcttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttattactatttccttcaacattattgttgctt |
317 |
Q |
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| T |
47422878 |
cctctttgcgcttctcttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttattactatttccttcaacattattgttgctt |
47422779 |
T |
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| Q |
318 |
ctgtttattacacttgtagtagacttgaggtttatgagtgccaacacttcttctc |
372 |
Q |
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| T |
47422778 |
ctgtttattacacttgtagtagacttgaggtttatgagtgccaacacttcatctc |
47422724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 274
Target Start/End: Original strand, 36127406 - 36127513
Alignment:
| Q |
167 |
atcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttgcacttctcttgtatcccaactcaaacatcccttcagagatt |
266 |
Q |
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| T |
36127406 |
atcctttgtttttctgaaatacttgttgatattctcccacttctctttgcatctctttgcacttctcttgtatcctaactccaacattccttgtgaaatt |
36127505 |
T |
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| Q |
267 |
ctctccca |
274 |
Q |
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| T |
36127506 |
ctctccca |
36127513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 12683339 - 12683295
Alignment:
| Q |
183 |
aaatacttatttatgttttcccatttttctttacacctctttgca |
227 |
Q |
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| T |
12683339 |
aaatacttgttaatgttttcccatttctctttgcacctctttgca |
12683295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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