View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11303_high_2 (Length: 470)
Name: NF11303_high_2
Description: NF11303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11303_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 124 - 364
Target Start/End: Original strand, 28737375 - 28737618
Alignment:
| Q |
124 |
acaaatatccattatataaat--attcttgttgtttttgatttgcctacttaccaaggtttggattttaaaatttcaccccgttgtacaaatagtacga- |
220 |
Q |
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| T |
28737375 |
acaaatgtccattataaaaatgtattcttgttgtttttgatttgcctacttaccaaggtttggattttaaaatttcaccccgttgtacaaatagtacgac |
28737474 |
T |
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| Q |
221 |
tataattcttaactcttaatctgcacatgaacacgaggagattgcggaatacaggttgtaatcctctaacatcaagaaaaagattagttaaataccacaa |
320 |
Q |
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| T |
28737475 |
tataattcttaactcttaatctgcacatgaacacgaggagattgcggaatacaggttgtaatcctctaacatcaagaaaaagattagttaaataccacac |
28737574 |
T |
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| Q |
321 |
ttttgaagtattttattgatagtggtttattagattgatgtggc |
364 |
Q |
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| T |
28737575 |
ttttgaagtattttattgatagtggtttattagattgatgtggc |
28737618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 124 - 252
Target Start/End: Original strand, 28714071 - 28714201
Alignment:
| Q |
124 |
acaaatatccattatataaat--attcttgttgtttttgatttgcctacttaccaaggtttggattttaaaatttcaccccgttgtacaaatagtacgat |
221 |
Q |
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|||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28714071 |
acaaatgtccattataaaaatgcattcttgttgttttcgatttgcctacttaccaaggtttggattttaaaatttcaccccattgtacaaatagtac-tg |
28714169 |
T |
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| Q |
222 |
ataattctt-aactcttaatctgcacatgaac |
252 |
Q |
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| T |
28714170 |
ctaattcttaaactattaatctgcacatgaac |
28714201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 28737056 - 28737130
Alignment:
| Q |
1 |
ttgaatttgaagttgccttcaattgcatctttagcagtaaaccccatctttgtttcttcagtttgcagtgagtga |
75 |
Q |
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| T |
28737056 |
ttgaatttgaagttgccttcaatttcatctttagcagtaaaccccatcttagtttcttcagtttgcagtgagtga |
28737130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 350
Target Start/End: Original strand, 28714222 - 28714337
Alignment:
| Q |
237 |
taatctgcacatgaacacgaggagattgcgg-----aatacaggttgtaatcctctaacatcaagaaaaagattagttaaataccacaattttgaagtat |
331 |
Q |
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| T |
28714222 |
taatctgcacatgaac--gaggagattgcgattttaaatacaggctgtaatcatc-aacatcaagacaaagattagttaaataccacatttttgaagtat |
28714318 |
T |
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| Q |
332 |
tttattgatagtggtttat |
350 |
Q |
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| T |
28714319 |
tttattgatagtggtttat |
28714337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 28713782 - 28713856
Alignment:
| Q |
1 |
ttgaatttgaagttgccttcaattgcatctttagcagtaaaccccatctttgtttcttcagtttgcagtgagtga |
75 |
Q |
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|||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28713782 |
ttgaatttgaagttgccttcaacttcatctgtagcagtaaaccccatcttagtttcttcagtttgcagtgagtga |
28713856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 28692296 - 28692244
Alignment:
| Q |
149 |
ttgttgtttttgatttgcctacttaccaaggtttggattttaaaatttcaccc |
201 |
Q |
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| T |
28692296 |
ttgttgcttttgatttgcgtacttaccaaggtttggattttaaattttcaccc |
28692244 |
T |
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