View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11303_high_3 (Length: 417)
Name: NF11303_high_3
Description: NF11303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11303_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 42204049 - 42203658
Alignment:
| Q |
18 |
aatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaactatcccggcttttacagctctagctttgtctccatgataaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42204049 |
aatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaactatcccggcttttacagctctagctttgtctccatgataaa |
42203950 |
T |
|
| Q |
118 |
tacatagattaaatatagcagtagcagcaccttttttgccacttggagtaccttcacaaagtaacataactaaagagagttatagctgcattttctctag |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42203949 |
tacatagattaaatatagcagtagcagcaccttttttgcctcttggagtaccttcacaaagtaacataactaaagagagttatagctgcattttctctag |
42203850 |
T |
|
| Q |
218 |
cctccatcctttgttactctcgttgatggaatgattgagaagtactgtaacaacgtgctcctgagttcaatgatctgtggaagacaacaagtctacgaga |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42203849 |
cctccatcctttgttactctcgttgatggaatgattgagaagtactgtaacaacgtgctcctgagttcgatgatctgtggaagacaacaagtctacgaga |
42203750 |
T |
|
| Q |
318 |
agcggtattgctcctgccttgacaatacatactcgatctgcattcctcttagccagctagcaaccggagctcatcatcagccaccctttgct |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42203749 |
agcggtattgctcctgccttgacaatacatactcgatctgcattcctcttagccagctagcaaccggagctcatcatcagccaccctttgct |
42203658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 42212917 - 42212526
Alignment:
| Q |
18 |
aatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaactatcccggcttttacagctctagctttgtctccatgataaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212917 |
aatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaactatcccggcttttacagctctagctttgtctccatgataaa |
42212818 |
T |
|
| Q |
118 |
tacatagattaaatatagcagtagcagcaccttttttgccacttggagtaccttcacaaagtaacataactaaagagagttatagctgcattttctctag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212817 |
tacatagattaaatatagcagtagcagcaccttttttgcctcttggagtaccttcacaaagtaacataactaaagagagttatagctgcattttctctag |
42212718 |
T |
|
| Q |
218 |
cctccatcctttgttactctcgttgatggaatgattgagaagtactgtaacaacgtgctcctgagttcaatgatctgtggaagacaacaagtctacgaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
42212717 |
cctccatcctttgttactctcgttgatggaatgattgagaagtactgtaacaacgtgctcctgagttcgatgatctgtggaagacaacaagtctacgaga |
42212618 |
T |
|
| Q |
318 |
agcggtattgctcctgccttgacaatacatactcgatctgcattcctcttagccagctagcaaccggagctcatcatcagccaccctttgct |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212617 |
agcggtattgctcctgccttgacaatacatactcgatctgcattcctcttagccagctagcaaccggagctcatcatcagccaccctttgct |
42212526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 42218868 - 42218703
Alignment:
| Q |
18 |
aatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaactatcccggcttttacagctctagctttgtctccatgataaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
42218868 |
aatgctttgtcaaccatcccacgtcccgcatcgttcataaattgtatcaatggagcaactatcccggctttcacagctctagctttgtttccatgataaa |
42218769 |
T |
|
| Q |
118 |
tacatagattaaatatagcagtagcagcacctt-ttttgccacttggagtaccttcacaaagtaac |
182 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
42218768 |
tacatagattaaatatagcggtagcagcacctttttttgcctcttggagtaccttcacaaagtaac |
42218703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 42420213 - 42420375
Alignment:
| Q |
20 |
tgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaactatcccggcttttacagctctagctttgtctccatgataaata |
119 |
Q |
| |
|
||||| |||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
42420213 |
tgcttcgtcaaccatcccaccgcccgcatccttcataaatcgtatcaacggagcaactatcccggctttaacagctctagctttgtttccttgataaata |
42420312 |
T |
|
| Q |
120 |
catagattaaatatagcagtagcagcaccttttttgccacttggagtaccttcacaaagtaac |
182 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| |
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| T |
42420313 |
catagattaaatatagcagtagctgcatcttttttgcctcttggagtaccttcacaaagtaac |
42420375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 224 - 409
Target Start/End: Original strand, 42420537 - 42420721
Alignment:
| Q |
224 |
tcctttgttactctcgttgatggaatgattgagaagtactgtaacaacgtgctcctgagttcaatgatctgtggaagacaacaagtctacgagaagcggt |
323 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||| |||||||| | ||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
42420537 |
tcctttgttactctcgttgatggaaagattcagaagtgctgtaacagcatgctcctgagttcgaggatctgtggaagacaacaagtctacgagaagcggt |
42420636 |
T |
|
| Q |
324 |
attgctcctgccttgacaatacatactcg---atctgcattcctcttagccagctagcaaccggagctcatcatcagccaccctttgct |
409 |
Q |
| |
|
||||||||||| | | | ||||||||||| ||||||||||||||| ||| ||||||||||||||| || ||||| ||||||||| |
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| T |
42420637 |
attgctcctgcttcggctatacatactcggttatctgcattcctcttggcc----agcaaccggagctcaccagcagccgccctttgct |
42420721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 232 - 315
Target Start/End: Complemental strand, 42218535 - 42218452
Alignment:
| Q |
232 |
tactctcgttgatggaatgattgagaagtactgtaacaacgtgctcctgagttcaatgatctgtggaagacaacaagtctacga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||| |
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|
| T |
42218535 |
tactctcgttgatggaatgattgagaagtactgtaacaacatgctcctgagttcgaggatctgttgaagacaacaagtctacga |
42218452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 224 - 374
Target Start/End: Original strand, 42408714 - 42408867
Alignment:
| Q |
224 |
tcctttgttactctcgttgatggaatgattgagaagtactgtaacaacgtgctcctgagttcaatgatctgtggaagacaacaagtctacgagaagcggt |
323 |
Q |
| |
|
||||||||||||||| ||||||| | | ||||||||| |||||||| | || ||| |||||||| |||| ||||| ||||||| ||||| ||||||||| |
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| T |
42408714 |
tcctttgttactctctttgatggtaaggttgagaagtgctgtaacagcatgttcccgagttcaaggatccgtggaggacaacagctctacaagaagcggt |
42408813 |
T |
|
| Q |
324 |
attgctcctgccttgacaatacatactcg---atctgcattcctcttagccagc |
374 |
Q |
| |
|
|||||||||| | | ||||||||||| | ||||||||||||||| |||||| |
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|
| T |
42408814 |
attgctcctgattcggcaatacatacttggttatctgcattcctcttggccagc |
42408867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 42218637 - 42218599
Alignment:
| Q |
186 |
actaaagagagttatagctgcattttctctagcctccat |
224 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
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|
| T |
42218637 |
actaaagagagtcgtagctgcattttctctagcctccat |
42218599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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