View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11303_high_9 (Length: 217)
Name: NF11303_high_9
Description: NF11303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11303_high_9 |
 | |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 26397351 - 26397567
Alignment:
| Q |
1 |
gcatttggaggtttcccactcattgccttaagccatgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397351 |
gcatttggaggtttcccacccattgccttaagccatgttttcatcaaccatttgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatc |
26397450 |
T |
|
| Q |
101 |
ttgactgaaagtgattattcacaccaatgaatggagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26397451 |
ttgactgaaagtgattattcacaccaatgaatggagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaatcacatctccaaacac |
26397550 |
T |
|
| Q |
201 |
tttataatcatctctac |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26397551 |
tttataatcatctctac |
26397567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 31 - 213
Target Start/End: Complemental strand, 26460329 - 26460147
Alignment:
| Q |
31 |
agccatgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatcttgactgaaagtgattattcacaccaatga |
130 |
Q |
| |
|
||||| |||||||||| |||| |||| |||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
26460329 |
agccaagttttcatcacccatgtgaaagtctccgaggtctcatttgctagtaatgcacaaccaagcaatcttgattgaaagtgattattcacaccaatga |
26460230 |
T |
|
| Q |
131 |
atggagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatct |
213 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||| |||||||| || || |||||||||||| |||| ||||||||| |
|
|
| T |
26460229 |
agggagcaaatgacattttatatttgtttgtgatatatgttgtatcaaaagatatcacatctccaaactctttgtaatcatct |
26460147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 25829912 - 25830124
Alignment:
| Q |
5 |
ttggaggtttcccactcattgccttaagccatgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatcttga |
104 |
Q |
| |
|
||||||||||||| | |||||| | |||| ||||||||||||||| |||| | | || ||||||| | ||||| || ||||| ||||| ||||| |
|
|
| T |
25829912 |
ttggaggtttcccgcccattgctctgagccttgttttcatcaaccaagtgaaattatttgacgtctcatctataagtaaagcgcaaccaagtaaccttga |
25830011 |
T |
|
| Q |
105 |
ctgaaagtgattattcacaccaatgaatggagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacacttta |
204 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||| | |||| || || |||||||||||||| ||| | || ||||| ||||||||||| ||||| |
|
|
| T |
25830012 |
ctgaaagtgattattcacaccaataaaaggagcaaatgacgttttgtacttatttgtgatatatgttgtaccgaatgaaatcacatctccaaattcttta |
25830111 |
T |
|
| Q |
205 |
taatcatctctac |
217 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25830112 |
taatcatctctac |
25830124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 19219885 - 19220015
Alignment:
| Q |
31 |
agccatgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatcttgactgaaagtgattattcacaccaatga |
130 |
Q |
| |
|
|||||||||||||||| |||| || | | | ||||||| || | ||||||||| |||| ||||| ||||||||||||| ||||||||||||||| | |
|
|
| T |
19219885 |
agccatgttttcatcatccatatgagagtatttgaggtctaatctactagtaatgtgtaaccaagtaaccttgactgaaagttattattcacaccaataa |
19219984 |
T |
|
| Q |
131 |
atggagcaaatggcattttatatttgtttgt |
161 |
Q |
| |
|
| |||| | ||| ||||||||| || ||||| |
|
|
| T |
19219985 |
aaggagaacatgacattttatacttatttgt |
19220015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 276746 - 276962
Alignment:
| Q |
1 |
gcatttggaggtttcccactcattgccttaagccatgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276746 |
gcatttggaggtttcccacccattgccttaagccatgttttcatcaaccatttgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatc |
276845 |
T |
|
| Q |
101 |
ttgactgaaagtgattattcacaccaatgaatggagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
276846 |
ttgactgaaagtgattattcacaccaatgaatgtagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaatcacatctccaaacac |
276945 |
T |
|
| Q |
201 |
tttataatcatctctac |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
276946 |
tttataatcatctctac |
276962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 29638 - 29852
Alignment:
| Q |
3 |
atttggaggtttcccactcattgccttaagccatgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatctt |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29638 |
atttggaggtttcccacatattgccttaagccatgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgattaatctt |
29737 |
T |
|
| Q |
103 |
gactgaaagtgattattcacaccaatgaatggagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29738 |
gactgaaagtgattattcacaccaatgaatggagcaaatggtattttatatttgtttgtgatatatgtagtatcaaaggaaatcacatctccaaacactt |
29837 |
T |
|
| Q |
203 |
tataatcatctctac |
217 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29838 |
tataatcatctctac |
29852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 20646085 - 20646306
Alignment:
| Q |
1 |
gcatttggaggtttcccactcattgccttaagccatgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatc |
100 |
Q |
| |
|
||||||||||| ||||||| ||||| | ||||||| ||||||| ||||||| |||| |||| ||||||||||||||||||||||||| ||| || |||| |
|
|
| T |
20646085 |
gcatttggaggcttcccacccattgtcctaagccaagttttcaccaaccatgtgaaagtctctgaggtctcatttgctagtaatgcaccaccaagcaatc |
20646184 |
T |
|
| Q |
101 |
ttgactgaaagtgattattcacaccaatg---------aatggagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaattacatc |
191 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| || || ||||| |
|
|
| T |
20646185 |
ttgattgaaagtgattattcacaccaatgaagggagcaaatggagcaaatggcattttatatttgtctgtgatatatgttgtatcaaaagatatcacatc |
20646284 |
T |
|
| Q |
192 |
tccaaacactttataatcatct |
213 |
Q |
| |
|
||||||| |||| ||||||||| |
|
|
| T |
20646285 |
tccaaactctttgtaatcatct |
20646306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 56108694 - 56108478
Alignment:
| Q |
1 |
gcatttggaggtttcccactcattgccttaagccatgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatc |
100 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||||| |||||||||||||| |||| | | |||||||| || ||||||||||| || ||||| | |
|
|
| T |
56108694 |
gcatttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaagtgttcttggtctcatctgagagtaatgcacagccaagtaacc |
56108595 |
T |
|
| Q |
101 |
ttgactgaaagtgattattcacaccaatgaatggagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacac |
200 |
Q |
| |
|
|||| ||||||||||| || |||||||| || ||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||||||||||| | |
|
|
| T |
56108594 |
ttgattgaaagtgattgtttacaccaataaaaggagcaaatggcattttgtacttatttgtgatatatgtagtatcaaatgaaatcacatctccaaactc |
56108495 |
T |
|
| Q |
201 |
tttataatcatctctac |
217 |
Q |
| |
|
|| ||| || ||||||| |
|
|
| T |
56108494 |
ttgatagtcttctctac |
56108478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 33002646 - 33002464
Alignment:
| Q |
35 |
atgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatcttgactgaaagtgattattcacaccaatgaatgg |
134 |
Q |
| |
|
|||||||||||||||| |||| | || |||||||||| | ||||||| || ||||| | ||| ||||||||||||||||||||||||||||| || || |
|
|
| T |
33002646 |
atgttttcatcaaccaagtgaaagtatccgaggtctcatctactagtaaagcgcaaccaaataaccttgactgaaagtgattattcacaccaataaaagg |
33002547 |
T |
|
| Q |
135 |
agcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatctctac |
217 |
Q |
| |
|
||||||||||||||| || || |||||||||||||| ||||| || ||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
33002546 |
agcaaatggcattttgtacttatttgtgatatatgttgtatcgaatgaaatcacatctccaaattcttgataatcatctctac |
33002464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 26014461 - 26014245
Alignment:
| Q |
1 |
gcatttggaggtttcccactcattgccttaagccatgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatc |
100 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||||| |||||||||||||| |||| | | ||||||| || ||||||||||| || ||||| | |
|
|
| T |
26014461 |
gcatttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaagtgttcttagtctcatctgagagtaatgcacagccaagtaacc |
26014362 |
T |
|
| Q |
101 |
ttgactgaaagtgattattcacaccaatgaatggagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacac |
200 |
Q |
| |
|
|||| ||||||||||| || |||||||| || ||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||||||||||| | |
|
|
| T |
26014361 |
ttgattgaaagtgattgtttacaccaataaaaggagcaaatggcattttgtacttatttgtgatatatgtagtatcaaatgaaatcacatctccaaactc |
26014262 |
T |
|
| Q |
201 |
tttataatcatctctac |
217 |
Q |
| |
|
|| ||| || ||||||| |
|
|
| T |
26014261 |
ttgatagtcttctctac |
26014245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 6965966 - 6965769
Alignment:
| Q |
1 |
gcatttggaggtttcccactcattgccttaagccatgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatc |
100 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||||| |||||||||||||| |||| | | |||||||| || ||||||||||| || ||||| | |
|
|
| T |
6965966 |
gcatttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaaatgttcttggtctcatctgagagtaatgcacagccaagtaacc |
6965867 |
T |
|
| Q |
101 |
ttgactgaaagtgattattcacaccaatgaatggagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaac |
198 |
Q |
| |
|
|||| ||||||||||| || |||||||| || |||||||||| |||||| || || |||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
6965866 |
ttgattgaaagtgattgtttacaccaataaaaggagcaaatgacattttgtacttatttgtggtatatgtagtatcaaatgaaatcacatctccaaac |
6965769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 30400453 - 30400404
Alignment:
| Q |
79 |
agtaatgcacaaccgagtaatcttgactgaaagtgattattcacaccaat |
128 |
Q |
| |
|
|||||||| ||||| ||||| |||||| |||||||||||||| ||||||| |
|
|
| T |
30400453 |
agtaatgcgcaaccaagtaaccttgaccgaaagtgattattctcaccaat |
30400404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 30407010 - 30406961
Alignment:
| Q |
79 |
agtaatgcacaaccgagtaatcttgactgaaagtgattattcacaccaat |
128 |
Q |
| |
|
|||||||| ||||| ||||| |||||| |||||||||||||| ||||||| |
|
|
| T |
30407010 |
agtaatgcgcaaccaagtaaccttgaccgaaagtgattattctcaccaat |
30406961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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