View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11303_low_1 (Length: 489)
Name: NF11303_low_1
Description: NF11303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11303_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 31 - 471
Target Start/End: Original strand, 17836091 - 17836529
Alignment:
| Q |
31 |
agcaaagttgcgggaaaaagatcagctgaaaaaggtgtttcagagctgacggcttatgagttggatggcgatgaatttgccacaaaattagtcaaactga |
130 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
17836091 |
agcaaagttgcggggaaaagatcggctgaaaaaggtgtttcagagctgatggcttatgagttggatggcgatgaatctgccacaaaatcagtcaaactga |
17836190 |
T |
|
| Q |
131 |
aaagtgtgaagcttgagcccaaagattaagaatagtgtcatgttgcagtccgtttcatcaattattttaaaaattgtttggatgttatggtttatttctt |
230 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17836191 |
aaagtgtgaagcttgagcccaaatattaagaatagtgtcatgttgcagtccgtttcatcaattattttaaaaattgtttgaatgttatggtttatttctt |
17836290 |
T |
|
| Q |
231 |
cggtattgtttttgtttcttgaagtactattggttagtgttactttaagcgccatttatggtgtatgacatttcttatccgtcttttgtttaattctaaa |
330 |
Q |
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| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17836291 |
ccgtattgtttttgtttcttgaagtactattggttcgtgttactttaagtaccgtttatggtgtatgacatttcttatccgtc-tttgtttaattctaaa |
17836389 |
T |
|
| Q |
331 |
gttatcacttttttgatctattcaatacctttgttagcactcttttacaattatgagtaaccatactgtagaaattgcatgtatattcaattttatgaca |
430 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17836390 |
gttatc-cttttttgatctattcaatacctttgttagcactcttttacaattatgagcaaccataccgtagaaattgcatgtatattcaattttatgaca |
17836488 |
T |
|
| Q |
431 |
tggtctgtttagaagtacattactaacctattagaggatct |
471 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
17836489 |
gggtctgtttagaagtacattactaacctattagaggatct |
17836529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 27 - 336
Target Start/End: Original strand, 4094280 - 4094592
Alignment:
| Q |
27 |
ttgcagcaaagttgcgggaaaaagatcagctgaaaaaggtgtttcagagctgacggcttatgagttggatggcgatgaatttgccacaaaattagtcaaa |
126 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||||||||||||| ||||| |||||| |||||||||| || |||| ||| ||||||| ||||| |
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| T |
4094280 |
ttgcagcaaagttgtttgtaaaagatcagctgagaaaggtgtttcagatctgacagcttataagttggatggggacgaatctgcaacaaaatctgtcaag |
4094379 |
T |
|
| Q |
127 |
ctgaaaagtgtgaagcttgagcccaaagattaagaatagtgtcatgttgcagtccgtttcatcaattattttaaaaattgtttggatgttatggtttat- |
225 |
Q |
| |
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||||| |||||||||||||||| ||| |||| || || |||||| |||||||| || | |||| ||| | ||||| | || || | |||||| |
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| T |
4094380 |
ctgaagtgtgtgaagcttgagcctaaaaattaggatgagcgtcatgatgcagtccattaattatattaattttacaattgcctagaaattttcgtttatg |
4094479 |
T |
|
| Q |
226 |
--ttcttcggtattgtttttgtttcttgaagtactattggttagtgttactttaagcgccatttatggtgtatgacatttcttatccgtcttttgtttaa |
323 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||| ||| || || ||||||||||| ||||||||||||||||||| ||||| | |||||||||| |
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| T |
4094480 |
tatttttctctattgtttttgtttcttgaagtactatttgttcgttttcctttaagcgccggttatggtgtatgacatttcatatccttattttgtttaa |
4094579 |
T |
|
| Q |
324 |
ttctaaagttatc |
336 |
Q |
| |
|
||| || |||||| |
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|
| T |
4094580 |
ttcgaatgttatc |
4094592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 27 - 326
Target Start/End: Original strand, 4438792 - 4439094
Alignment:
| Q |
27 |
ttgcagcaaagttgcgggaaaaagatcagctgaaaaaggtgtttcagagctgacggcttatgagttggatggcgatgaatttgccacaaaattagtcaaa |
126 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||||||||||||| |||| |||||| |||||||||| || |||| ||||||| ||| |||| |
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|
| T |
4438792 |
ttgcagcaaagttgtatggaaaagatcagctgagaaaggtgtttcagatgtgacagcttataagttggatggggacgaatctgccacagaatctatcaag |
4438891 |
T |
|
| Q |
127 |
ctgaaaagtgtgaagcttgagcccaaagattaagaatagtgtcatgttgcagtccgtttcatcaattattttaaaaattgtttggatgttatggtttat- |
225 |
Q |
| |
|
||||| |||||||||||||||| ||| |||| || ||||||||| |||||||| || | |||| ||| | ||||| | || || | |||||| |
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| T |
4438892 |
ctgaagtgtgtgaagcttgagcctaaaaattaggatgagtgtcatgatgcagtcccttaattatattaattttacaattgcctagaaatttttgtttatg |
4438991 |
T |
|
| Q |
226 |
--ttcttcggtattgtttttgtttcttgaagtactattggttagtgttactttaagcgccatttatggtgtatgacatttcttatccgtcttttgtttaa |
323 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||| ||| || || ||||||||||| ||||||||||||||||||| ||||| | |||||||||| |
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| T |
4438992 |
tatttttctctattgtttttgtttcttgaagtactatttgttcgttttcctttaagcgccggttatggtgtatgacatttcatatccttattttgtttaa |
4439091 |
T |
|
| Q |
324 |
ttc |
326 |
Q |
| |
|
||| |
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|
| T |
4439092 |
ttc |
4439094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 27 - 326
Target Start/End: Complemental strand, 46592046 - 46591744
Alignment:
| Q |
27 |
ttgcagcaaagttgcgggaaaaagatcagctgaaaaaggtgtttcagagctgacggcttatgagttggatggcgatgaatttgccacaaaattagtcaaa |
126 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||||||||||||| |||| |||||| |||||||||| || |||| ||||||| ||| ||||| |
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| T |
46592046 |
ttgcagcaaagttgtatggaaaagatcagctgagaaaggtgtttcagatgtgacagcttataagttggatggggacgaatctgccacagaatctatcaaa |
46591947 |
T |
|
| Q |
127 |
ctgaaaagtgtgaagcttgagcccaaagattaagaatagtgtcatgttgcagtccgtttcatcaattattttaaaaattgtttggatgttatggtttat- |
225 |
Q |
| |
|
||||| |||||||||||||||| ||| |||| || ||||||||| |||||||| || | |||| ||| | ||||| | || || | |||||| |
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|
| T |
46591946 |
ctgaagtgtgtgaagcttgagcctaaaaattaggatgagtgtcatgatgcagtcccttaattatattaattttacaattgcctagaaatttttgtttatg |
46591847 |
T |
|
| Q |
226 |
--ttcttcggtattgtttttgtttcttgaagtactattggttagtgttactttaagcgccatttatggtgtatgacatttcttatccgtcttttgtttaa |
323 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||| ||| || || ||||||||||| ||||||||||||||||||| ||||| | |||||||||| |
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| T |
46591846 |
tatttttctctattgtttttgtttcttgaagtactatttgttcgttttcctttaagcgccggttatggtgtatgacatttcatatccttattttgtttaa |
46591747 |
T |
|
| Q |
324 |
ttc |
326 |
Q |
| |
|
||| |
|
|
| T |
46591746 |
ttc |
46591744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 27 - 326
Target Start/End: Complemental strand, 37715583 - 37715281
Alignment:
| Q |
27 |
ttgcagcaaagttgcgggaaaaagatcagctgaaaaaggtgtttcagagctgacggcttatgagttggatggcgatgaatttgccacaaaattagtcaaa |
126 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||||||||||||| |||| |||||| |||||||||| || |||| ||||||||||| |||| |
|
|
| T |
37715583 |
ttgcagcaaagttgtatggaaaagatcagctgagaaaggtgtttcagatgtgacagcttataagttggatggggacgaatctgccacaaaatctatcaag |
37715484 |
T |
|
| Q |
127 |
ctgaaaagtgtgaagcttgagcccaaagattaagaatagtgtcatgttgcagtccgtttcatcaattattttaaaaattgtttggatgttatggtttat- |
225 |
Q |
| |
|
||||| |||||||||||||||| ||| |||| || ||||||||| |||||||| || | |||| ||| | ||||| | || || | |||||| |
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|
| T |
37715483 |
ctgaagtgtgtgaagcttgagcctaaaaattaggatgagtgtcatgatgcagtcccttaattatattaattttacaattgcctagaaatttttgtttatg |
37715384 |
T |
|
| Q |
226 |
--ttcttcggtattgtttttgtttcttgaagtactattggttagtgttactttaagcgccatttatggtgtatgacatttcttatccgtcttttgtttaa |
323 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||| ||| || | ||||||||||| ||||||||||||||||||| ||||| | |||||||||| |
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|
| T |
37715383 |
tatttttctctattgtttttgtttcttgaagtactatttgttcgttgtcctttaagcgccggttatggtgtatgacatttcatatccttattttgtttaa |
37715284 |
T |
|
| Q |
324 |
ttc |
326 |
Q |
| |
|
||| |
|
|
| T |
37715283 |
ttc |
37715281 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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