View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11303_low_4 (Length: 367)

Name: NF11303_low_4
Description: NF11303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11303_low_4
NF11303_low_4
[»] chr4 (8 HSPs)
chr4 (1-367)||(7482389-7482755)
chr4 (1-367)||(7128383-7128749)
chr4 (1-367)||(7721657-7722023)
chr4 (1-327)||(7520498-7520821)
chr4 (1-322)||(7494836-7495154)
chr4 (1-363)||(7528512-7528871)
chr4 (2-40)||(18046566-18046604)
chr4 (2-71)||(18034549-18034618)
[»] chr8 (1 HSPs)
chr8 (1-327)||(16749661-16749990)
[»] chr3 (3 HSPs)
chr3 (2-40)||(4398722-4398760)
chr3 (2-71)||(4518911-4518980)
chr3 (2-38)||(4497884-4497920)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 7482755 - 7482389
Alignment:
Q  1 tcttttggaaacagtgaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagtttgataagctgaaaaattttcttatcatctt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  7482755 tcttttggaaacaatgaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagtttgataagctgaaaaattttattatcacctt 7482656  T
Q  101 gttcatcaattttcataagatctatgttcttgaatgttgaccaatcctccttcggcatggaatgcattaagcttccaatgcttctaatggcgagaggaac 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||    
T  7482655 gttcatcaattttcataagatctttgttcttgaatgttgaccaatcctccttccgcatggaatagattaagcttccaatgcttctaatggcgagaggaac 7482556  T
Q  201 ccctgaacatttgttcacaatttccttgccaattgaccccaattcctcattctctagtttgttgtgattctcaaaagctaatcgactaaataatctacaa 300  Q
     || | |||||| ||||||||||||||||||| |||| | ||||||||||||||  |||  |||| |||||||||||||||| ||||||||||||| |||    
T  7482555 acccgcacattttttcacaatttccttgccaactgacacaaattcctcattctcctgttctttgtcattctcaaaagctaattgactaaataatctccaa 7482456  T
Q  301 gattgtttttcatcgagaccctctaaattgaggctagaagatgtaccacttgccttggcaaccttct 367  Q
    |||||||||||||| ||||||| |||||||| | |||||||||||||||||||||||||||||||||    
T  7482455 gattgtttttcatccagaccctttaaattgaagatagaagatgtaccacttgccttggcaaccttct 7482389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 7128383 - 7128749
Alignment:
Q  1 tcttttggaaacagtgaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagtttgataagctgaaaaattttcttatcatctt 100  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||    
T  7128383 tcttttgggaacaatgaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagtttgataagctgtaaaattttattatcacctt 7128482  T
Q  101 gttcatcaattttcataagatctatgttcttgaatgttgaccaatcctccttcggcatggaatgcattaagcttccaatgcttctaatggcgagaggaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  7128483 gttcatcaattttcataagatctatgttcttgaatgttgaccaatcctccttctgcatggaatacattaagcttccaatgcttctgatggcgagaggaac 7128582  T
Q  201 ccctgaacatttgttcacaatttccttgccaattgaccccaattcctcattctctagtttgttgtgattctcaaaagctaatcgactaaataatctacaa 300  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||   ||| |||||||||||||||| ||||||||||| | |||    
T  7128583 ccctgaacattttttcacaatttccttgccaattgacaccaattcctcattctctagttctctgtcattctcaaaagctaattgactaaataatgtccaa 7128682  T
Q  301 gattgtttttcatcgagaccctctaaattgaggctagaagatgtaccacttgccttggcaaccttct 367  Q
    ||||||||||||  |||||||| ||||   | | ||||||||| |||||||||||||||||||||||    
T  7128683 gattgtttttcactgagaccctttaaaaacaagatagaagatgaaccacttgccttggcaaccttct 7128749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 7721657 - 7722023
Alignment:
Q  1 tcttttggaaacagtgaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagtttgataagctgaaaaattttcttatcatctt 100  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||    
T  7721657 tcttttggaaacaaagaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagtttgataagctgtaaaattttattatcacctt 7721756  T
Q  101 gttcatcaattttcataagatctatgttcttgaatgttgaccaatcctccttcggcatggaatgcattaagcttccaatgcttctaatggcgagaggaac 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  7721757 gttcatcaattttcataagatctttgttcttgaatgttgaccaatccttcttcggcatggaatacatcaagcttccaatgcttctaatggcgagcggaac 7721856  T
Q  201 ccctgaacatttgttcacaatttccttgccaattgaccccaattcctcattctctagtttgttgtgattctcaaaagctaatcgactaaataatctacaa 300  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||   ||  ||||||||||| |||  ||||| ||||||| |||    
T  7721857 ccctgaacattttttcacaatttccttgccaattgacaccaattcctcattctctagttctctgaaattctcaaaagttaactgactatataatctccaa 7721956  T
Q  301 gattgtttttcatcgagaccctctaaattgaggctagaagatgtaccacttgccttggcaaccttct 367  Q
    |||| |||||||||||| |||| |||||||| | ||||||||| |||||||||||||||||||||||    
T  7721957 gattctttttcatcgagtccctttaaattgaagatagaagatggaccacttgccttggcaaccttct 7722023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 7520821 - 7520498
Alignment:
Q  1 tcttttggaaacagtgaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagtttgataagctgaaaaattttcttatcatctt 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||| |||    
T  7520821 tcttttggaaacaatgaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagtttgataagctgtaaaatttt---atcacctt 7520725  T
Q  101 gttcatcaattttcataagatctatgttcttgaatgttgaccaatcctccttcggcatggaatgcattaagcttccaatgcttctaatggcgagaggaac 200  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  7520724 gttcatcaatttgcataagatctttgttcttgaatgttgaccaatcctccttctgcatggaatacattaagcttccaatgcttctgatggcgagaggaac 7520625  T
Q  201 ccctgaacatttgttcacaatttccttgccaattgaccccaattcctcattctctagtttgttgtgattctcaaaagctaatcgactaaataatctacaa 300  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||   | | |||||||||||||||| ||||||||||| | |||    
T  7520624 ccctgaacatttcttcacaatttccttgccaattgacaccaattcctcattctctagttctctctcattctcaaaagctaattgactaaataatgtccaa 7520525  T
Q  301 gattgtttttcatcgagaccctctaaa 327  Q
    |||||||||||| ||||||||| ||||    
T  7520524 gattgtttttcaccgagaccctgtaaa 7520498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 7495154 - 7494836
Alignment:
Q  1 tcttttggaaacagtgaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagtttgataagctgaaaaattttcttatcatctt 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||| |||    
T  7495154 tcttttggaaacaatgaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagtttgataagctgtaaaatttt---atcacctt 7495058  T
Q  101 gttcatcaattttcataagatctatgttcttgaatgttgaccaatcctccttcggcatggaatgcattaagcttccaatgcttctaatggcgagaggaac 200  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  7495057 gttcatcaatttgcataagatctttgttcttgaatgatgaccaatcctccttctgcatggaatacattaagcttccaatgcttctgatggcgagaggaac 7494958  T
Q  201 ccctgaacatttgttcacaatttccttgccaattgaccccaattcctcattctctagtttgttgtgattctcaaaagctaatcgactaaataatctacaa 300  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||   | | |||||||||||||||| ||||||||||| | |||    
T  7494957 ccctgaacatttcttcacaatttccttgccaattgacaccaattcctcattctctagttctctctcattctcaaaagctaattgactaaataatgtccaa 7494858  T
Q  301 gattgtttttcatcgagaccct 322  Q
    |||||||||||| |||||||||    
T  7494857 gattgtttttcaccgagaccct 7494836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 7528871 - 7528512
Alignment:
Q  1 tcttttggaaacagtgaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagtttgataagctgaaaaattttcttatcatctt 100  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||| |||    
T  7528871 tcttttggaaacaaagaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagtttgataagctgtaaaatttt---atcacctt 7528775  T
Q  101 gttcatcaattttcataagatctatgttcttgaatgttgaccaatcctccttcggcatggaatgcattaagcttccaatgcttctaatggcgagaggaac 200  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||  | || ||| ||||||||||||||||||||| ||||||||||||||    
T  7528774 gttcatcaatttgcataagatctttgttcttgaatgttgaccaatcctccttctccttgaaatacattaagcttccaatgcttctgatggcgagaggaac 7528675  T
Q  201 ccctgaacatttgttcacaatttccttgccaattgaccccaattcctcattctctagtttgttgtgattctcaaaagctaatcgactaaataatctacaa 300  Q
     || | |||||| |||||||||||||||||||||||| |||||||||||||||||||||   ||| |||||||||||||||| ||||||||||| | |||    
T  7528674 acccgcacattttttcacaatttccttgccaattgacaccaattcctcattctctagttctctgtcattctcaaaagctaattgactaaataatgtccaa 7528575  T
Q  301 gattgtttttcatcgagaccctctaaattgaggctagaagatgtaccacttgccttggcaacc 363  Q
    ||||||||||||  ||||||||  |||   | | ||||||||| |||||||||||||||||||    
T  7528574 gattgtttttcactgagacccttcaaaaacaagatagaagatgaaccacttgccttggcaacc 7528512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 18046604 - 18046566
Alignment:
Q  2 cttttggaaacagtgaacaaaaagcaaagcactttttca 40  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  18046604 cttttggaaacagtgaacaataggcaaagcactttttca 18046566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 18034549 - 18034618
Alignment:
Q  2 cttttggaaacagtgaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagttt 71  Q
    |||||||||||||||||||| | |||||||||||||| | |    |||| |||||||||||||| |||||    
T  18034549 cttttggaaacagtgaacaataggcaaagcacttttttagaaacgatggaagatgatcataactcagttt 18034618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 16749661 - 16749990
Alignment:
Q  1 tcttttggaaacagtgaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagtttgataagctgaaaaattttcttatcatctt 100  Q
    |||||||||||||  || ||||| |||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||| ||  || | |    
T  16749661 tcttttggaaacaaagagcaaaatgcaaagcactttttcagataaaagggtagatgatcataacttagtttgataagttgaaaaattttattgccaccct 16749760  T
Q  101 gttcatcaattttcataagatctatgttcttgaatgttgaccaatcctcct---tcggcatggaatgcattaagcttccaatgcttctaatggcgagagg 197  Q
    | ||||||||||| ||||||||| ||||||||||  |  ||||||||| ||   |   ||| |||  |||||| |||||||| ||| ||   || |||||    
T  16749761 gctcatcaattttgataagatctttgttcttgaagttcaaccaatccttctcagtttccatagaaaacattaaacttccaatacttttatgagcaagagg 16749860  T
Q  198 aacccctgaacatttgttcacaatttccttgccaattgac-cccaattcctcattctctagtttgttgtgattctcaaaagctaatcgactaaataatct 296  Q
     |||||||||||||| ||   ||||||||||||||||||| ||||| |    |||||||  ||  ||  ||||||||||||||||| |||| || ||  |    
T  16749861 tacccctgaacatttttttgaaatttccttgccaattgacacccaaat-tggattctctgattcttttcgattctcaaaagctaattgactgaacaaatt 16749959  T
Q  297 acaagattgtttttcatcgagaccctctaaa 327  Q
     ||||||||||||||||| ||||||| ||||    
T  16749960 ccaagattgtttttcatcaagaccctttaaa 16749990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 4398722 - 4398760
Alignment:
Q  2 cttttggaaacagtgaacaaaaagcaaagcactttttca 40  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  4398722 cttttggaaacagtgaacaataggcaaagcactttttca 4398760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 4518980 - 4518911
Alignment:
Q  2 cttttggaaacagtgaacaaaaagcaaagcactttttcaaatgaaatggtagatgatcataacttagttt 71  Q
    |||||||||||||||||||| | |||||||||||||| | |    |||| |||||||||||||| |||||    
T  4518980 cttttggaaacagtgaacaataggcaaagcacttttttagaaacgatggaagatgatcataactcagttt 4518911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 4497920 - 4497884
Alignment:
Q  2 cttttggaaacagtgaacaaaaagcaaagcacttttt 38  Q
    |||||||||||||||||||| | ||||||||||||||    
T  4497920 cttttggaaacagtgaacaataggcaaagcacttttt 4497884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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