View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11303_low_6 (Length: 321)
Name: NF11303_low_6
Description: NF11303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11303_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 121 - 303
Target Start/End: Original strand, 28417992 - 28418181
Alignment:
| Q |
121 |
gtggagatcttagtacatgttaattgctttgttaaactaatttacaataatttatcgaagnnnnnnnnnctaatatgcaacattttcaatcacacacgct |
220 |
Q |
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| T |
28417992 |
gtggagatcttagtacatgttaattgctttgttaaactaatttacaataatttatcgaagaaaaaaaaactaatatgcaacattttcaatcacacacact |
28418091 |
T |
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| Q |
221 |
taaccatatatttcctcaaggtttaaccttttatttttccct-------ttaatacacgggtaaattttatgcagacaagacaactcaac |
303 |
Q |
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| T |
28418092 |
taaccatatatttcctcacggtttaaccttttatttttccctttaataattaatacacgggtaaattttatgcagacaagacaactcaac |
28418181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 28417949 - 28418000
Alignment:
| Q |
1 |
aaatacatccgaggcattgaaaacggcctctgactgagttcgagtggagatc |
52 |
Q |
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| T |
28417949 |
aaatacatccgaggcattgaaaacggcctctgactgagttcaagtggagatc |
28418000 |
T |
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