View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11303_low_8 (Length: 281)
Name: NF11303_low_8
Description: NF11303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11303_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 25 - 272
Target Start/End: Complemental strand, 32378045 - 32377798
Alignment:
| Q |
25 |
ttattgtgaaagctcaaagttcagtatcagaatgatttcagttgaaaatggtgttgtaaatcaccaagatgaaattgaagaatctaatgggagtcaagtg |
124 |
Q |
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| T |
32378045 |
ttattgtgaaagctcaaagttcagtatcagaatgatttcagttgaaaatggtattgtaaatcaccaagatgaaattgaagaatctaatgggagtcaagtg |
32377946 |
T |
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| Q |
125 |
aaggaatttgcttctatagatatttcaaccactcaaaaaacatttccaagcaatgaaaatcctcaaagaaagtttctcaaaattggttctgcatctgcca |
224 |
Q |
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| T |
32377945 |
aaggaatttgcttctatagatatttcaaccactccaaaaacatttccaagcaatgaaaatcctcaaagaaagtttctcaaaattggttctgcatctgcca |
32377846 |
T |
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| Q |
225 |
aagtcaatgagcttgttattgaaaaagaccagatttcacagtctgtgc |
272 |
Q |
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| T |
32377845 |
aagtcaatgagcttgttattgaaaaagaccagatttcacagtctgtgc |
32377798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 27 - 272
Target Start/End: Complemental strand, 32366358 - 32366113
Alignment:
| Q |
27 |
attgtgaaagctcaaagttcagtatcagaatgatttcagttgaaaatggtgttgtaaatcaccaagatgaaattgaagaatctaatgggagtcaagtgaa |
126 |
Q |
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| T |
32366358 |
attgtgaaagctcaaagttaagtatcagaatgatttcagttgaaaatggtatcacaaatcaccaagatgaaattgaagaatctaaagggagtcaagtgaa |
32366259 |
T |
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| Q |
127 |
ggaatttgcttctatagatatttcaaccactcaaaaaacatttccaagcaatgaaaatcctcaaagaaagtttctcaaaattggttctgcatctgccaaa |
226 |
Q |
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| T |
32366258 |
ggagtttgcttctgtagatatttcaactcctacacaaacatttccgagcaatgaaaatcctcaaagagagtttctcaaattcggttctgcatctgccaaa |
32366159 |
T |
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| Q |
227 |
gtcaatgagcttgttattgaaaaagaccagatttcacagtctgtgc |
272 |
Q |
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| T |
32366158 |
ttcaaggaacttgttattgaaaaggaccaaatttcacagtctgtgc |
32366113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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