View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11303_low_9 (Length: 249)

Name: NF11303_low_9
Description: NF11303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11303_low_9
NF11303_low_9
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-246)||(29856-30101)
[»] chr2 (3 HSPs)
chr2 (1-246)||(26397571-26397816)
chr2 (4-236)||(26459901-26460136)
chr2 (4-223)||(25830131-25830350)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-246)||(276966-277211)
[»] chr4 (2 HSPs)
chr4 (4-211)||(20646317-20646524)
chr4 (4-246)||(56108229-56108471)
[»] chr6 (1 HSPs)
chr6 (4-246)||(26013996-26014238)
[»] chr7 (1 HSPs)
chr7 (9-246)||(6965501-6965737)
[»] chr1 (3 HSPs)
chr1 (54-236)||(845527-845709)
chr1 (12-213)||(30400105-30400307)
chr1 (12-213)||(30406662-30406864)
[»] chr3 (1 HSPs)
chr3 (4-233)||(33002229-33002457)


Alignment Details
Target: scaffold0182 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 29856 - 30101
Alignment:
Q  1 ttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactc 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29856 ttccatccacccaaaatacattttttacatgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactc 29955  T
Q  101 cagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcct 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29956 cagcattgcatttgcatctcctgattctaaattcaaacaacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcct 30055  T
Q  201 ccgtgttgtttggccattgtggcaaagattttgcttcatctcactc 246  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||    
T  30056 ccgtgttgtttggccattgtggcaaagattttgcttgttctcactc 30101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 26397571 - 26397816
Alignment:
Q  1 ttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26397571 ttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatacta 26397670  T
Q  101 cagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcct 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26397671 cagcattgcctttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatctt 26397770  T
Q  201 ccgtgttgtttggccattgtggcaaagattttgcttcatctcactc 246  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||    
T  26397771 ccgtgttgtttggccattgtggcaaagattttgcttgttctcactc 26397816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 26460136 - 26459901
Alignment:
Q  4 catccacccaaaatacattttttacacgaccatcatcatc---caaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactc 100  Q
    |||||| ||||||||||||||| | |||||||||||||||   |||||| |  |||||||||||||||| ||||| || ||||||| || || || | ||    
T  26460136 catccatccaaaatacatttttcagacgaccatcatcatcatccaaatccatcgcataaaagaatcttggattttgtttttgcataagcgtacaacattc 26460037  T
Q  101 cagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcct 200  Q
    || |||||||||||||||||||||||| ||| |||||||||| ||||||||||||  |||| ||| |||||||||||||||||||||||||||||| |||    
T  26460036 caacattgcatttgcatctcctgattccaaagtcaaacgacgatccttatctaaaagatttttaatatctttctccaagcaaccaactttctcataccct 26459937  T
Q  201 ccgtgttgtttggccattgtggcaaagattttgctt 236  Q
    ||||||||||| || | ||||||||| | |||||||    
T  26459936 ccgtgttgtttcgcaagtgtggcaaaaaatttgctt 26459901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 25830131 - 25830350
Alignment:
Q  4 catccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccag 103  Q
    |||||| |||||| |||||| |||||||| | |||||||||||||||| ||||||||| ||||| | |||||||||||||||| |||||||| ||||||     
T  25830131 catccatccaaaacacatttcttacacgatcttcatcatccaaatcaattgcataaaaaaatctaggattttcttcttgcataagcataaaacactccaa 25830230  T
Q  104 cattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccg 203  Q
    |||||   |||| ||||| || |||||   |||||||||    |||||||||| ||||||||  |||||||||||||| | ||  || ||||| |||||     
T  25830231 cattgttgttgcttctcccgactctaatgccaaacgacgacttttatctaaatgatttctaatgtctttctccaagcagctaatgttttcataccctcca 25830330  T
Q  204 tgttgtttggccattgtggc 223  Q
    ||||||||||||||||||||    
T  25830331 tgttgtttggccattgtggc 25830350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 276966 - 277211
Alignment:
Q  1 ttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  276966 ttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgtataaaatactt 277065  T
Q  101 cagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcct 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  277066 cagcattgcctttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatctt 277165  T
Q  201 ccgtgttgtttggccattgtggcaaagattttgcttcatctcactc 246  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||    
T  277166 ccgtgttgtttggccattgtggcaaagattttgcttgttctcactc 277211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 4 - 211
Target Start/End: Original strand, 20646317 - 20646524
Alignment:
Q  4 catccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccag 103  Q
    |||||||||||||||||||||| | ||||||||||||||||||||| |  |||||||||||||||||||||| |||||||||| || ||||| ||||||     
T  20646317 catccacccaaaatacatttttcagacgaccatcatcatccaaatccatcgcataaaagaatcttgaatttttttcttgcataagcgtaaaacactccaa 20646416  T
Q  104 cattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccg 203  Q
    |||||||||||||||||||||||| ||| |||||||| | ||||||||||||  |||||||| |||||||||| ||||||||||||||||||||||||||    
T  20646417 cattgcatttgcatctcctgattccaaagtcaaacgatgatccttatctaaaagatttctaatatctttctccgagcaaccaactttctcatatcctccg 20646516  T
Q  204 tgttgttt 211  Q
    ||||||||    
T  20646517 tgttgttt 20646524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 56108471 - 56108229
Alignment:
Q  4 catccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccag 103  Q
    |||||||||||||||||||||| |  ||||| |||||||||| ||||| |||||||||||||| || | |||||||||||||  |||||||| | || |     
T  56108471 catccacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcctggactttcttcttgcatgagcataaaacaatctaa 56108372  T
Q  104 cattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccg 203  Q
    |||||||||||||||||| |||||||||  |||||| ||  | ||||||||||  ||||| ||||||||||||||||||||||  || |||||||||||     
T  56108371 cattgcatttgcatctccagattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagcaaccaatgttttcatatcctcca 56108272  T
Q  204 tgttgtttggccattgtggcaaagattttgcttcatctcactc 246  Q
    | || |||||||||||||||||| |||||||||  ||||||||    
T  56108271 tattctttggccattgtggcaaaaattttgcttgttctcactc 56108229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 26014238 - 26013996
Alignment:
Q  4 catccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccag 103  Q
    |||||||||||||||||||||| |  ||||| |||||||||| ||||| |||||||||||||| || | |||||||||||||  |||||||| | ||||     
T  26014238 catccacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcctggactttcttcttgcatgagcataaaacaatccaa 26014139  T
Q  104 cattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccg 203  Q
    |||||||||||||||||| |||||||||  |||||| ||  | ||||||||||  ||||| ||||||||||||||||||||||  || |||||||||||     
T  26014138 cattgcatttgcatctccagattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagcaaccaatgttttcatatcctcca 26014039  T
Q  204 tgttgtttggccattgtggcaaagattttgcttcatctcactc 246  Q
    | || |||||||||||||||||| | |||||||  ||||||||    
T  26014038 tattctttggccattgtggcaaaaaatttgcttgttctcactc 26013996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 6965737 - 6965501
Alignment:
Q  9 acccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattg 108  Q
    ||||||||||||||||| |  ||||| |||||||||| ||||| |||||||||||||| || |||||||||||||||  |||||||| | |||| |||||    
T  6965737 acccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcctggattttcttcttgcatgagcataaaacaatccaacattg 6965638  T
Q  109 catttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttg 208  Q
    |||||||||||||||||||||||  |||||| ||  | ||||||||||  ||||| |||||||||||||||||||||| | | ||||||||||| | ||     
T  6965637 catttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagcaaccaa-tgtttcatatcctccatattc 6965539  T
Q  209 tttggccattgtggcaaagattttgcttcatctcactc 246  Q
    |||||||||||||||||| | |||||||  ||||||||    
T  6965538 tttggccattgtggcaaaaaatttgcttgttctcactc 6965501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 845527 - 845709
Alignment:
Q  54 gcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatcta 153  Q
    |||||||||||||||||||||| |||||||||| || ||||| |||||| |||||||||||||||||||||||  ||| |||||||||| ||||||||||    
T  845527 gcataaaagaatcttgaattttgttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgatttcaaagtcaaacgacgatccttatcta 845626  T
Q  154 aataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt 236  Q
    ||  |||| ||| |||||| ||| ||||||||||||||||||| |||||||||||||| || | ||||||||| |||||||||    
T  845627 aaagatttataatatctttttccgagcaaccaactttctcataccctccgtgttgtttcgcaagtgtggcaaaaattttgctt 845709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 30400307 - 30400105
Alignment:
Q  12 caaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcat 111  Q
    |||||||||||| |||||||| | |||||||| |||||||   || |||| |||||   ||||| |||||||||| |||||||  |||||| |||||||     
T  30400307 caaaatacatttcttacacgatcctcatcatctaaatcaatcacacaaaaaaatctaagattttattcttgcataagcataaac-actccaacattgcag 30400209  T
Q  112 ttgcatctcctgattctaaatt--caaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgt 209  Q
    |||| ||||| || ||||||    |||| ||||    |||||||||| ||||||||  |||||||||||||||||||  || ||||||| ||| ||||||    
T  30400208 ttgcgtctcccgactctaaaaagccaaatgacgacttttatctaaatgatttctaatgtctttctccaagcaaccaatgttttcatatcatccatgttgt 30400109  T
Q  210 ttgg 213  Q
    ||||    
T  30400108 ttgg 30400105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 30406864 - 30406662
Alignment:
Q  12 caaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcat 111  Q
    |||||||||||| |||||||| | |||||||| |||||||   || |||| |||||   ||||| |||||||||| |||||||  |||||| |||||||     
T  30406864 caaaatacatttcttacacgatcctcatcatctaaatcaatcacacaaaaaaatctaagattttattcttgcataagcataaac-actccaacattgcag 30406766  T
Q  112 ttgcatctcctgattctaaatt--caaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgt 209  Q
    |||| ||||| || ||||||    |||| ||||    |||||||||| ||||||||  |||||||||||||||||||  || ||||||| ||| ||||||    
T  30406765 ttgcgtctcccgactctaaaaagccaaatgacgacttttatctaaatgatttctaatgtctttctccaagcaaccaatgttttcatatcatccatgttgt 30406666  T
Q  210 ttgg 213  Q
    ||||    
T  30406665 ttgg 30406662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 33002457 - 33002229
Alignment:
Q  4 catccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccag 103  Q
    |||||||||||||||| ||| |||||||| | |||||||||||||||| ||||||||| ||||| | |||||||||||||||| |||||||| ||||||     
T  33002457 catccacccaaaatacgtttcttacacgatcttcatcatccaaatcaattgcataaaa-aatctaggattttcttcttgcataagcataaaacactccaa 33002359  T
Q  104 cattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccg 203  Q
    |||||   |||||||||| || |||||   |||||||||    |||||||||| ||||||||  |||||||||||||| ||||  || ||||| |||||     
T  33002358 cattgttgttgcatctcccgactctaatgccaaacgacgacttttatctaaatgatttctaatgtctttctccaagcatccaatgttttcataccctcca 33002259  T
Q  204 tgttgtttggccattgtggcaaagattttg 233  Q
    |||||||||||||||||||| || ||||||    
T  33002258 tgttgtttggccattgtggcgaaaattttg 33002229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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