View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11304_high_10 (Length: 309)
Name: NF11304_high_10
Description: NF11304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11304_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 37704716 - 37704454
Alignment:
| Q |
18 |
ctgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagat |
117 |
Q |
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| T |
37704716 |
ctgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagat |
37704617 |
T |
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| Q |
118 |
attatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcaccccca |
217 |
Q |
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| T |
37704616 |
attatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcaccccca |
37704517 |
T |
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| Q |
218 |
aaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
280 |
Q |
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| T |
37704516 |
aaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
37704454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 37699238 - 37698974
Alignment:
| Q |
21 |
tgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaaga |
116 |
Q |
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| T |
37699238 |
tgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttggttttccaaga |
37699139 |
T |
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| Q |
117 |
tattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcaccccc |
216 |
Q |
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| T |
37699138 |
tgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatgaaaagcaccccc |
37699039 |
T |
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| Q |
217 |
aaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
279 |
Q |
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| T |
37699038 |
aacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 37437778 - 37437520
Alignment:
| Q |
21 |
tgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaaga |
116 |
Q |
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| T |
37437778 |
tgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactt----gctaattacgttcgaaaagtcttggtcttccaata |
37437683 |
T |
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| Q |
117 |
tattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcaccccc |
216 |
Q |
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| T |
37437682 |
tgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatattgttgccaattgtcatatcactatacggttatgaaaagca-cccc |
37437584 |
T |
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| Q |
217 |
aaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
280 |
Q |
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| T |
37437583 |
acattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggt |
37437520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 32 - 280
Target Start/End: Complemental strand, 37698864 - 37698636
Alignment:
| Q |
32 |
taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttag |
126 |
Q |
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| T |
37698864 |
taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag |
37698765 |
T |
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| Q |
127 |
tttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaat |
226 |
Q |
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| T |
37698764 |
tttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaat |
37698690 |
T |
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| Q |
227 |
aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
280 |
Q |
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| T |
37698689 |
aagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 16840970 - 16841109
Alignment:
| Q |
19 |
tgtgattgctacttaaatgaatttgttatcttat------cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttc |
111 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
16840970 |
tgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaaagtcttggtcttc |
16841068 |
T |
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| Q |
112 |
gaagatattatttagtttaatgaacaccaaacttttctatg |
152 |
Q |
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| T |
16841069 |
caagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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