View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11304_high_2 (Length: 356)

Name: NF11304_high_2
Description: NF11304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11304_high_2
NF11304_high_2
[»] chr3 (4 HSPs)
chr3 (30-280)||(5351915-5352164)
chr3 (30-157)||(5344897-5345024)
chr3 (107-151)||(5325075-5325119)
chr3 (99-157)||(5338089-5338147)
[»] chr7 (8 HSPs)
chr7 (271-327)||(39577595-39577651)
chr7 (274-327)||(39592072-39592125)
chr7 (271-326)||(39541732-39541787)
chr7 (271-327)||(39334772-39334828)
chr7 (271-327)||(39346036-39346092)
chr7 (271-327)||(39567779-39567835)
chr7 (271-326)||(39550989-39551044)
chr7 (271-328)||(39360580-39360637)
[»] chr8 (1 HSPs)
chr8 (54-146)||(14535283-14535375)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 280
Target Start/End: Original strand, 5351915 - 5352164
Alignment:
Q  30 tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351915 tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt 5352014  T
Q  130 caacttcaaggcaaaaattgaaacaactctaagttccataaattgcttcaatcgtgatttttattcaattaataaaacgtatttgttctttatttacatt 229  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||    
T  5352015 caacttcaaggcaaaaattgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaaaaaaatgta-ttgttctttatttgcatt 5352113  T
Q  230 tagaattttatttgcattgttgcattgtcctgtgttttatttgcaatgtta 280  Q
    ||||||||||||||||||||||| ||||||||||||| |||| ||||||||    
T  5352114 tagaattttatttgcattgttgccttgtcctgtgtttgatttacaatgtta 5352164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 5344897 - 5345024
Alignment:
Q  30 tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt 129  Q
    |||||||||||||||||||||  ||||||| |||||||||||| ||||||| |||||||  |||  || | |||| |||||||||||||||||||| ||     
T  5344897 tcagcctccagcaaaatttaatagtgatggtgatttgattgatgaagatgctaagaataggttgttggcaattctgttgtccttgaaggcatttactctg 5344996  T
Q  130 caacttcaaggcaaaaattgaaacaact 157  Q
    ||||||||||||||||||||||||||||    
T  5344997 caacttcaaggcaaaaattgaaacaact 5345024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 5325119 - 5325075
Alignment:
Q  107 tgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaa 151  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||    
T  5325119 tgtccttgaaggaatttacccttaaacttcaaggcagaaattgaa 5325075  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 5338147 - 5338089
Alignment:
Q  99 agttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaaacaact 157  Q
    ||||||| ||||||| |||| |||||||||||| ||||||||  ||| |||||||||||    
T  5338147 agttcttgtgtccttaaaggaatttacccttcagcttcaaggttaaatttgaaacaact 5338089  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 39577651 - 39577595
Alignment:
Q  271 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577651 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 39577595  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 39592125 - 39592072
Alignment:
Q  274 aatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 327  Q
    ||||||||||||||| |||||||||||||| ||||| || ||||||||||||||    
T  39592125 aatgttaagaggtatttctggaggacaaagaaaacgtgtaacgacaggtaaaac 39592072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 39541787 - 39541732
Alignment:
Q  271 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaa 326  Q
    |||||||||| ||||||||||||| ||||||| |||||| ||||| ||||||||||    
T  39541787 tgcaatgttacgaggtatctctggtggacaaaagaaacgcgttacaacaggtaaaa 39541732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 39334772 - 39334828
Alignment:
Q  271 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 327  Q
    ||||||| |||||||||||||||| ||||||| ||||||  |||| |||||||||||    
T  39334772 tgcaatgataagaggtatctctggcggacaaaagaaacgccttacaacaggtaaaac 39334828  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 39346036 - 39346092
Alignment:
Q  271 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 327  Q
    ||||||| |||||||||||||||| ||||||| ||||||  |||| |||||||||||    
T  39346036 tgcaatgataagaggtatctctggcggacaaaagaaacgccttacaacaggtaaaac 39346092  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 39567835 - 39567779
Alignment:
Q  271 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 327  Q
    |||||||||| ||||||||||||| ||||||| ||||||  |||| |||||||||||    
T  39567835 tgcaatgttacgaggtatctctggtggacaaaagaaacgccttacaacaggtaaaac 39567779  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 39551044 - 39550989
Alignment:
Q  271 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaa 326  Q
    |||||||||| ||||||||||||| ||||||| |||||| ||||| || |||||||    
T  39551044 tgcaatgttacgaggtatctctggtggacaaaagaaacgcgttacaactggtaaaa 39550989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 39360580 - 39360637
Alignment:
Q  271 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaact 328  Q
    ||||||| |||||| ||||||||| ||||||| ||||||  |||| ||||||||||||    
T  39360580 tgcaatgataagagctatctctggcggacaaaagaaacgccttacaacaggtaaaact 39360637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 14535375 - 14535283
Alignment:
Q  54 tgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaa 146  Q
    ||||||||||||||||||| |||| || |||||||| ||| |   ||||||||| || ||| |||||||||| ||    ||||||||||||||    
T  14535375 tgatggcgatttgattgatgaagaggctaagaataagttgaaacaagttcttttatctttgcaggcatttactctaaggcttcaaggcaaaaa 14535283  T

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