View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11304_high_5 (Length: 346)

Name: NF11304_high_5
Description: NF11304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11304_high_5
NF11304_high_5
[»] chr4 (8 HSPs)
chr4 (15-288)||(7721513-7721785)
chr4 (15-292)||(7128231-7128511)
chr4 (15-288)||(7482627-7482903)
chr4 (15-287)||(7495029-7495298)
chr4 (15-292)||(7520696-7520973)
chr4 (15-288)||(7528746-7529019)
chr4 (104-142)||(18046566-18046604)
chr4 (73-142)||(18034549-18034618)
[»] chr8 (1 HSPs)
chr8 (15-279)||(16749525-16749789)
[»] chr3 (3 HSPs)
chr3 (104-142)||(4398722-4398760)
chr3 (73-142)||(4518911-4518980)
chr3 (106-142)||(4497884-4497920)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 288
Target Start/End: Complemental strand, 7721785 - 7721513
Alignment:
Q  15 gaacatagatcttatgaaaattgatgaacaagatgataagaaaatttttcagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgc 114  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7721785 gaacaaagatcttatgaaaattgatgaacaaggtgataataaaattttacagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgc 7721686  T
Q  115 tttgctttttgttcactgtttccaaaagactatttaattgagaaaacatcattgattcgactttggattgcacaagggtttgttcagtctttagatgaaa 214  Q
    ||||||||||||||  |||||||||||||||||||||||   |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  7721685 tttgctttttgttctttgtttccaaaagactatttaatt-ccaaaacaacattgattcgactttggattgcacaagggtttgttcagtcatcagatgaaa 7721587  T
Q  215 gtacaagtttagaagatactggttatttgtacttcatggatttagttcataaatctttctttcaaaaaatcacc 288  Q
    |||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||||||| ||||||    
T  7721586 gtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatatcacc 7721513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 292
Target Start/End: Complemental strand, 7128511 - 7128231
Alignment:
Q  15 gaacatagatcttatgaaaattgatgaacaagatgataagaaaatttttcagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgc 114  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7128511 gaacatagatcttatgaaaattgatgaacaaggtgataataaaattttacagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgc 7128412  T
Q  115 tttgctttttgttcactgtttccaaaagactatttaattgagaaaacatcattgattcgactttggattgcacaagggtttgttcag---tctttagatg 211  Q
    ||||||||||||||| |||| ||||||||||||||||||   |||||| ||||||||||| ||||||||||||||||||||||||||   || | |||||    
T  7128411 tttgctttttgttcattgttcccaaaagactatttaattcctaaaacaacattgattcgagtttggattgcacaagggtttgttcagtcatcatcagatg 7128312  T
Q  212 aaagtacaagtttagaagatactggttatttgtacttcatggatttagttcataaatctttctttcaaaaaatcaccaaac 292  Q
    ||||||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7128311 aaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatatcaccaaac 7128231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 7482627 - 7482903
Alignment:
Q  15 gaacatagatcttatgaaaattgatgaacaagatgataagaaaatttttcagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgc 114  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7482627 gaacaaagatcttatgaaaattgatgaacaaggtgataataaaatttttcagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgc 7482726  T
Q  115 tttgctttttgttcactgtttccaaaagactatttaattgagaaaacatcattgattcgactttggattgcacaagggtttgttcag---tctttagatg 211  Q
    ||||||||||||||| ||||||||||||||| |||||||   |||| | ||||||||||||||||||||||||||||||||||||||   || | |||||    
T  7482727 tttgctttttgttcattgtttccaaaagactttttaatttgtaaaataacattgattcgactttggattgcacaagggtttgttcagtcatcatcagatg 7482826  T
Q  212 aaagtacaagtttagaagatactggttatttgtacttcatggatttagttcataaatctttctttcaaaaaatcacc 288  Q
    ||||||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||||||| ||||||    
T  7482827 aaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatatcacc 7482903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 7495029 - 7495298
Alignment:
Q  15 gaacatagatcttatgaaaattgatgaacaagatgataagaaaatttttcagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgc 114  Q
    ||||| |||||||||| ||||||||||||||| ||||||   |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7495029 gaacaaagatcttatgcaaattgatgaacaaggtgataa---aattttacagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgc 7495125  T
Q  115 tttgctttttgttcactgtttccaaaagactatttaattgagaaaacatcattgattcgactttggattgcacaagggtttgttcagtctttagatgaaa 214  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| |  |||||||    
T  7495126 tttgctttttgttcattgtttccaaaagactatttaattgataaaacaaaattgattcgactttggattgcacaagggtttgttcagtcatctgatgaaa 7495225  T
Q  215 gtacaagtttagaagatactggttatttgtacttcatggatttagttcataaatctttctttcaaaaaatcac 287  Q
    |||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||||||| |||||    
T  7495226 gtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatatcac 7495298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 7520696 - 7520973
Alignment:
Q  15 gaacatagatcttatgaaaattgatgaacaagatgataagaaaatttttcagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgc 114  Q
    ||||| |||||||||| ||||||||||||||| ||||||   |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7520696 gaacaaagatcttatgcaaattgatgaacaaggtgataa---aattttacagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgc 7520792  T
Q  115 tttgctttttgttcactgtttccaaaagactatttaattgagaaaacatcattgattcgactttggattgcacaagggtttgttcag---tctttagatg 211  Q
    ||||||||||||||| ||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||||||   || | |||||    
T  7520793 tttgctttttgttcattgtttccaaaagactatttcattcataaaacaacattgattcgactttggattgcacaagggtttgttcagtcatcatcagatg 7520892  T
Q  212 aaagtacaagtttagaagatactggttatttgtacttcatggatttagttcataaatctttctttcaaaaaatcaccaaac 292  Q
    ||||||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7520893 aaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatatcaccaaac 7520973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 7528746 - 7529019
Alignment:
Q  15 gaacatagatcttatgaaaattgatgaacaagatgataagaaaatttttcagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgc 114  Q
    ||||| |||||||||| ||||||||||||||| ||||||   |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7528746 gaacaaagatcttatgcaaattgatgaacaaggtgataa---aattttacagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgc 7528842  T
Q  115 tttgctttttgttcactgtttccaaaagactatttaattgagaaaacatcattgattcgactttggattgcacaagggtttgttcagtcttta---gatg 211  Q
    ||||||||||||||  ||||||||||||||||||| |||   |||||| |||||||||||||||||||||||||||||||||||||||| | |   ||||    
T  7528843 tttgctttttgttctttgtttccaaaagactatttcattccaaaaacaacattgattcgactttggattgcacaagggtttgttcagtcatcagatgatg 7528942  T
Q  212 aaagtacaagtttagaagatactggttatttgtacttcatggatttagttcataaatctttctttcaaaaaatcacc 288  Q
    ||||||||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||||||||| ||||||    
T  7528943 aaagtacaagtttagaagatattggtcatatgtacttcatggatttagtttataaatctttctttcaaaatatcacc 7529019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 18046566 - 18046604
Alignment:
Q  104 tgaaaaagtgctttgctttttgttcactgtttccaaaag 142  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  18046566 tgaaaaagtgctttgcctattgttcactgtttccaaaag 18046604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 18034618 - 18034549
Alignment:
Q  73 aaactaagttatgatcatctaccatttcatttgaaaaagtgctttgctttttgttcactgtttccaaaag 142  Q
    ||||| |||||||||||||| ||||    | | |||||||||||||| | ||||||||||||||||||||    
T  18034618 aaactgagttatgatcatcttccatcgtttctaaaaaagtgctttgcctattgttcactgtttccaaaag 18034549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 16749789 - 16749525
Alignment:
Q  15 gaacatagatcttatgaaaattgatgaacaagatgataagaaaatttttcagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgc 114  Q
    ||||| ||||||||| ||||||||||| || | ||  || ||||||||||| ||||||||||||||||||||||||||||| ||| || |||||||||||    
T  16749789 gaacaaagatcttatcaaaattgatgagcagggtggcaataaaatttttcaacttatcaaactaagttatgatcatctacccttttatctgaaaaagtgc 16749690  T
Q  115 tttgctttttgttcactgtttccaaaagactatttaattgagaaaacatcattgattcgactttggattgcacaagggtttgttcagtctttagatgaaa 214  Q
    ||||| ||||| ||  |||||||||||||||||  ||||||||| | |   ||||||||||||||||||||||||||  | ||||| || |  |||||||    
T  16749689 tttgcattttgctctttgtttccaaaagactatcgaattgagaagaaaaagttgattcgactttggattgcacaaggtctcgttcattcatccgatgaaa 16749590  T
Q  215 gtacaagtttagaagatactggttatttgtacttcatggatttagttcataaatctttctttcaa 279  Q
    |||||| ||||||||||| |||| ||  ||||||| ||  |||| |||||| |||| ||||||||    
T  16749589 gtacaaatttagaagataatggtgataagtacttcttgactttacttcatagatctatctttcaa 16749525  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 4398760 - 4398722
Alignment:
Q  104 tgaaaaagtgctttgctttttgttcactgtttccaaaag 142  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  4398760 tgaaaaagtgctttgcctattgttcactgtttccaaaag 4398722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 4518911 - 4518980
Alignment:
Q  73 aaactaagttatgatcatctaccatttcatttgaaaaagtgctttgctttttgttcactgtttccaaaag 142  Q
    ||||| |||||||||||||| ||||    | | |||||||||||||| | ||||||||||||||||||||    
T  4518911 aaactgagttatgatcatcttccatcgtttctaaaaaagtgctttgcctattgttcactgtttccaaaag 4518980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 4497884 - 4497920
Alignment:
Q  106 aaaaagtgctttgctttttgttcactgtttccaaaag 142  Q
    |||||||||||||| | ||||||||||||||||||||    
T  4497884 aaaaagtgctttgcctattgttcactgtttccaaaag 4497920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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