View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11304_high_6 (Length: 345)
Name: NF11304_high_6
Description: NF11304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11304_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 55444 - 55319
Alignment:
| Q |
3 |
acaaagaatgcttaagttgaaggatgtccacctgaaggttcttccatacgtattttaggttcccaattctagattggtttttgctagacagttgaaaaac |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55444 |
acaaagaatgcttaagttgaaggatgtccacctgaaggttcttccataggtattttaggttcccaattctagattggtttttgctagacagttgaaaaac |
55345 |
T |
|
| Q |
103 |
tgtagaggatgcttcaattagccaat |
128 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
55344 |
tgtagaggatgcttcaattagccaat |
55319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 55322 - 55267
Alignment:
| Q |
290 |
caatagttctataacatttgtgtttactactaccacaatttctattaaatataatt |
345 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
55322 |
caatagttctataacatttgtgtttgctactaccacaatttctattaaatataatt |
55267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 33755139 - 33754949
Alignment:
| Q |
3 |
acaaagaatgcttaagttgaaggatgtccacctgaaggttcttccatacgtattttaggttcccaattctagattggtttttgctagacagttgaaaaac |
102 |
Q |
| |
|
||||||| | ||||||||||||| |||||||||||||||| |||||| ||||||| ||| ||| ||| ||||||| || ||||||||| |
|
|
| T |
33755139 |
acaaagagtacttaagttgaagggtgtccacctgaaggttgttccatcggtattttgggt--------ctatattagtttttgtcgctcatttgaaaaac |
33755048 |
T |
|
| Q |
103 |
tgtagaggatgcttcaattagccaatgattttaactttcttacaaaaactattttgtagaatgtaacctttttaggacgcataagctgcaaatccatta |
201 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
33755047 |
tgtagaggatgcttcaattagccaaagattttaactttcttacaaaaactagtcggtaagttgtagcctttttagggcgcataagctgcaaatacatta |
33754949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University