View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11304_high_8 (Length: 314)

Name: NF11304_high_8
Description: NF11304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11304_high_8
NF11304_high_8
[»] chr8 (2 HSPs)
chr8 (51-306)||(14995215-14995470)
chr8 (21-57)||(22732207-22732243)
[»] chr4 (14 HSPs)
chr4 (51-306)||(41860608-41860863)
chr4 (51-306)||(52681467-52681722)
chr4 (184-305)||(30576567-30576688)
chr4 (54-208)||(15056967-15057124)
chr4 (187-233)||(47964110-47964156)
chr4 (21-57)||(41861939-41861975)
chr4 (21-57)||(41862030-41862066)
chr4 (21-57)||(41862121-41862157)
chr4 (21-57)||(41862212-41862248)
chr4 (21-57)||(41862403-41862439)
chr4 (21-57)||(41946638-41946674)
chr4 (21-57)||(41946729-41946765)
chr4 (21-57)||(52680359-52680395)
chr4 (21-57)||(53285696-53285732)
[»] chr3 (15 HSPs)
chr3 (51-305)||(26950254-26950508)
chr3 (51-306)||(36092538-36092793)
chr3 (51-306)||(18200483-18200738)
chr3 (189-275)||(12807577-12807663)
chr3 (195-282)||(14458470-14458557)
chr3 (21-57)||(854976-855012)
chr3 (21-57)||(6953291-6953327)
chr3 (21-57)||(6953430-6953466)
chr3 (21-57)||(6953812-6953848)
chr3 (21-57)||(18199352-18199388)
chr3 (21-57)||(36093873-36093909)
chr3 (21-57)||(36093964-36094000)
chr3 (21-57)||(36947725-36947761)
chr3 (21-57)||(36947864-36947900)
chr3 (21-57)||(36948003-36948039)
[»] chr7 (11 HSPs)
chr7 (51-306)||(22005714-22005969)
chr7 (51-306)||(7892490-7892745)
chr7 (50-306)||(3598985-3599241)
chr7 (189-282)||(13604170-13604262)
chr7 (21-57)||(3600149-3600185)
chr7 (21-57)||(5090967-5091003)
chr7 (21-57)||(7891382-7891418)
chr7 (21-57)||(13927440-13927476)
chr7 (21-57)||(22004323-22004359)
chr7 (21-57)||(22004514-22004550)
chr7 (21-57)||(22004605-22004641)
[»] chr5 (7 HSPs)
chr5 (51-306)||(32674006-32674261)
chr5 (51-247)||(22636691-22636891)
chr5 (189-282)||(21122329-21122422)
chr5 (21-57)||(20844506-20844542)
chr5 (21-57)||(23179540-23179576)
chr5 (21-57)||(23179631-23179667)
chr5 (21-57)||(32672891-32672927)
[»] chr2 (9 HSPs)
chr2 (51-306)||(13906996-13907251)
chr2 (51-306)||(26454641-26454896)
chr2 (51-306)||(40604478-40604733)
chr2 (21-57)||(32287325-32287361)
chr2 (21-57)||(13899908-13899944)
chr2 (21-57)||(13905806-13905842)
chr2 (21-57)||(26453534-26453570)
chr2 (21-57)||(35433139-35433175)
chr2 (21-57)||(40603369-40603405)
[»] chr6 (1 HSPs)
chr6 (51-306)||(3590335-3590590)
[»] chr1 (7 HSPs)
chr1 (51-306)||(35595685-35595940)
chr1 (51-306)||(2045984-2046239)
chr1 (21-57)||(2051974-2052010)
chr1 (21-57)||(39514207-39514243)
chr1 (21-57)||(45507254-45507290)
chr1 (21-57)||(45507403-45507439)
chr1 (21-57)||(49791612-49791648)
[»] scaffold0121 (3 HSPs)
scaffold0121 (21-57)||(41422-41458)
scaffold0121 (21-57)||(41240-41276)
scaffold0121 (21-57)||(41331-41367)
[»] scaffold0160 (1 HSPs)
scaffold0160 (21-57)||(36132-36168)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 51 - 306
Target Start/End: Complemental strand, 14995470 - 14995215
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995470 tcctcctcttttttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 14995371  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995370 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 14995271  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14995270 ttgtttagtttgatttttggttatttgtaatccgatgactgtttgaattgcattgc 14995215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 22732243 - 22732207
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  22732243 caaaccctaaccatgatttcctaatttcactcctcct 22732207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 51 - 306
Target Start/End: Complemental strand, 41860863 - 41860608
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860863 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 41860764  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860763 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 41860664  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860663 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 41860608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 52681467 - 52681722
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52681467 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacagctttttaggcttcttac 52681566  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||    
T  52681567 aaaatcaaagtaattgttatataattggtgtggggtttagtttgttgattttgcaattcaggaattttcaaattcggggttgaaataagagtatgagcat 52681666  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52681667 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggattgc 52681722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 305
Target Start/End: Complemental strand, 30576688 - 30576567
Alignment:
Q  184 ggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatcc 283  Q
    ||||||||||||| ||||||||||  || ||||| |||| | | |||||||||||||| | |||| |||||||| || ||||||| |||||||||||| |    
T  30576688 ggtttggtttgttcattttgcagtagagaaatttccaaaatggcggttggaataagagcaagagcttttgtttaattggattttttgttatttgtaattc 30576589  T
Q  284 gatgactttttgaattgcattg 305  Q
    || || |||||||||| |||||    
T  30576588 gacgagtttttgaatttcattg 30576567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 208
Target Start/End: Original strand, 15056967 - 15057124
Alignment:
Q  54 tcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttacaaa 153  Q
    |||||||||| ||||| ||| ||||||||  |||||| ||  | |||||||||| | |||| |||||||| |||||||||||| ||||  |||||  |||    
T  15056967 tcctcttcttcgtgaccaagtttaaccacgtatctttattctctttcaattcctttgttgttcaaaatagattgcaatagcttcttagatttcttttaaa 15057066  T
Q  154 atcaaagtaattgtt----atatgattggtgtggggtttggtttgttgattttgcagtt 208  Q
    ||||| |||||||||    ||||||||| |||  |||||||| ||||||||||| ||||    
T  15057067 atcaacgtaattgttgttcatatgattgttgt-aggtttggtatgttgattttggagtt 15057124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 47964156 - 47964110
Alignment:
Q  187 ttggtttgttgattttgcagttcaggaattttcaaattcggggttgg 233  Q
    |||||||||||||||| ||||| | ||||||||||||| ||||||||    
T  47964156 ttggtttgttgattttacagtttatgaattttcaaattaggggttgg 47964110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 41861975 - 41861939
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41861975 caaaccctaaccatgatttcctaatttccctcctcct 41861939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 41862066 - 41862030
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41862066 caaaccctaaccatgatttcctaatttccctcctcct 41862030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 41862157 - 41862121
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41862157 caaaccctaaccatgatttcctaatttccctcctcct 41862121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 41862248 - 41862212
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41862248 caaaccctaaccatgatttcctaatttccctcctcct 41862212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 41862439 - 41862403
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41862439 caaaccctaaccatgatttcctaatttccctcctcct 41862403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 41946674 - 41946638
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41946674 caaaccctaaccatgatttcctaatttccctcctcct 41946638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 41946765 - 41946729
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41946765 caaaccctaaccatgatttcctaatttccctcctcct 41946729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 52680359 - 52680395
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  52680359 caaaccctaaccatgatttcctaatttccctcctcct 52680395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 53285696 - 53285732
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  53285696 caaaccctaaccatgatttcctaatttcactcctcct 53285732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 51 - 305
Target Start/End: Original strand, 26950254 - 26950508
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950254 tcctcctcttttctgtgactaaggttaaccacacatctttctttgcattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 26950353  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950354 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 26950453  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattg 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950454 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattg 26950508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 51 - 306
Target Start/End: Complemental strand, 36092793 - 36092538
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36092793 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 36092694  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36092693 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcatgaattttcaaattcggggttggaataagagtaggagcat 36092594  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36092593 ttgtttagtttgatttttggttatttgtaatctgatgactttttgaattgcattgc 36092538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 18200483 - 18200738
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18200483 tcctcctcttttatgtgactaaggttaaccacacatctttctctccattcaattcctctattgtacaaaatagcttgcaatagctttttagacttcttac 18200582  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  18200583 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaatttggggttggaataagaataggagcat 18200682  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18200683 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 18200738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 275
Target Start/End: Complemental strand, 12807663 - 12807577
Alignment:
Q  189 ggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatt 275  Q
    |||||||||||||| ||||| | ||||||||||||| ||||||   |||||||||  | |||||||||| |||||||||||||||||    
T  12807663 ggtttgttgattttacagtttatgaattttcaaattaggggttaagataagagtaataacatttgtttaatttgatttttggttatt 12807577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 14458557 - 14458470
Alignment:
Q  195 ttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatc 282  Q
    |||||||| ||||| | ||||||||||||| || |||   |||||||||  |||||||||||| ||| ||||||||| ||| ||||||    
T  14458557 ttgattttacagtttatgaattttcaaattaggagttaagataagagtaatagcatttgtttaattttatttttggtaattcgtaatc 14458470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 854976 - 855012
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  854976 caaaccctaaccatgatttcctaatttccctcctcct 855012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 6953327 - 6953291
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  6953327 caaaccctaaccatgatttcctaatttccctcctcct 6953291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 6953466 - 6953430
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  6953466 caaaccctaaccatgatttcctaatttccctcctcct 6953430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 6953848 - 6953812
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  6953848 caaaccctaaccatgatttcctaatttccctcctcct 6953812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 18199352 - 18199388
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  18199352 caaaccctaaccatgatttcctaatttccctcctcct 18199388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 36093909 - 36093873
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36093909 caaaccctaaccatgatttcctaatttccctcctcct 36093873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 36094000 - 36093964
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36094000 caaaccctaaccatgatttcctaatttccctcctcct 36093964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 36947761 - 36947725
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36947761 caaaccctaaccatgatttcctaatttccctcctcct 36947725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 36947900 - 36947864
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36947900 caaaccctaaccatgatttcctaatttccctcctcct 36947864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 36948039 - 36948003
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36948039 caaaccctaaccatgatttcctaatttccctcctcct 36948003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 22005714 - 22005969
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005714 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 22005813  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22005814 aaaatcaaagtaattgttatatgattggtgtggggtttggttttttgattttgcagttcaggaattttcaaattcggggttgaaataagagtaggagcat 22005913  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005914 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 22005969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 7892490 - 7892745
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7892490 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacagctttttaggcttcttac 7892589  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  7892590 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttgaaataagagtatgagcat 7892689  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7892690 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggattgc 7892745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 50 - 306
Target Start/End: Complemental strand, 3599241 - 3598985
Alignment:
Q  50 atcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttctta 149  Q
    ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3599241 atcctcctcttatctgtgactaaggttaaccacacatctttctttacattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttctta 3599142  T
Q  150 caaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagca 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  3599141 caaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgtagttcaggaattttcaaattcggggttggaataagagtgggagca 3599042  T
Q  250 tttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  3599041 tttgtttagtttgatttttggttatttgtatttcgatgactttttgaattgcattgc 3598985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 13604262 - 13604170
Alignment:
Q  189 ggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatc 282  Q
    |||||||||||||| || || | ||||||||||||| ||||||   |||||||||  | |||||||||| ||||||||||||||||| ||||||    
T  13604262 ggtttgttgattttacattt-atgaattttcaaattaggggttaagataagagtaataacatttgtttaatttgatttttggttattcgtaatc 13604170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 3600185 - 3600149
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  3600185 caaaccctaaccatgatttcctaatttccctcctcct 3600149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 5090967 - 5091003
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  5090967 caaaccctaaccatgatttcctaatttcactcctcct 5091003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 7891382 - 7891418
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  7891382 caaaccctaaccatgatttcctaatttccctcctcct 7891418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 13927440 - 13927476
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  13927440 caaaccctaaccatgatttcctaatttccctcctcct 13927476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 22004323 - 22004359
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  22004323 caaaccctaaccatgatttcctaatttccctcctcct 22004359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 22004514 - 22004550
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  22004514 caaaccctaaccatgatttcctaatttccctcctcct 22004550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 22004605 - 22004641
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  22004605 caaaccctaaccatgatttcctaatttccctcctcct 22004641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 32674006 - 32674261
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32674006 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaataacttgcaatagctttttaggcttcttac 32674105  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32674106 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcaattcaggaattttcaaattcggggttggaataagagtaggagcat 32674205  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32674206 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 32674261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 51 - 247
Target Start/End: Complemental strand, 22636891 - 22636691
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    ||||||||||||  |||||||||||||||| || |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  22636891 tcctcctcttctccgtgactaaggttaaccgcatatctttctttccgttcaattcctcttttgttcaaaatagcttgcaatagctttttaggcttcttac 22636792  T
Q  151 aaaatcaaagtaattgtt----atatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtagga 246  Q
    ||||||||||||||||||    |||||||||||||||||||| ||||||||||||||||||| | || |||||||||| | |||||||| ||||||||||    
T  22636791 aaaatcaaagtaattgttgttcatatgattggtgtggggttttgtttgttgattttgcagtttatgagttttcaaattggtggttggaaaaagagtagga 22636692  T
Q  247 g 247  Q
    |    
T  22636691 g 22636691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 21122329 - 21122422
Alignment:
Q  189 ggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatc 282  Q
    |||||||||||||| | ||  | ||||||| ||||| ||||||   |||||||||  |||||||||||| ||| ||||||||||||| ||||||    
T  21122329 ggtttgttgattttacggtctatgaatttttaaattaggggttaagataagagtaatagcatttgtttaattttatttttggttattcgtaatc 21122422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 20844506 - 20844542
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  20844506 caaaccctaaccatgatttcctaatttccctcctcct 20844542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 23179540 - 23179576
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  23179540 caaaccctaaccatgatttcctaatttccctcctcct 23179576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 23179631 - 23179667
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  23179631 caaaccctaaccatgatttcctaatttccctcctcct 23179667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 32672891 - 32672927
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32672891 caaaccctaaccatgatttcctaatttccctcctcct 32672927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 13906996 - 13907251
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13906996 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 13907095  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13907096 aaaatcaaagtaattgttatatgattggtgtggggtttggttttttgattttgcagttcaggaattttcaaattcggggttgaaataagagtaggagcat 13907195  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13907196 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 13907251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 26454641 - 26454896
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26454641 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacagctttttaggcttcttac 26454740  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  26454741 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttgaaataagagtatgagcat 26454840  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26454841 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 26454896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 40604478 - 40604733
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  40604478 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacaactttttaggcttcttac 40604577  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  40604578 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcagaaattttcaaattcggggttgaaataagagtatgagcat 40604677  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40604678 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggattgc 40604733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 32287325 - 32287361
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32287325 caaaccctaaccatgatttcctaatttccatcctcct 32287361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 13899908 - 13899944
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  13899908 caaaccctaaccatgatttcctaatttccctcctcct 13899944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 13905806 - 13905842
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  13905806 caaaccctaaccatgatttcctaatttccctcctcct 13905842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 26453534 - 26453570
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  26453534 caaaccctaaccatgatttcctaatttccctcctcct 26453570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 35433175 - 35433139
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  35433175 caaaccctaaccatgatttcctaatttccctcctcct 35433139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 40603369 - 40603405
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  40603369 caaaccctaaccatgatttcctaatttccctcctcct 40603405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 3590335 - 3590590
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3590335 tcctcctcttttatgtgactaaggttaaccacacatctttctctctattcaattcctctattgtacaaaatagcttgcaatagctttttagacttcttac 3590434  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3590435 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcagcaattttcaaattcggggttggaataagagtaggagcat 3590534  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3590535 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 3590590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 51 - 306
Target Start/End: Complemental strand, 35595940 - 35595685
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35595940 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 35595841  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35595840 aaaatcaaaataattgttatatgattggtgtgggatttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtgggagcat 35595741  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35595740 ttgtttagtttgatttttggttatttgtaatccgttgactttttgaattgcattgc 35595685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 51 - 306
Target Start/End: Complemental strand, 2046239 - 2045984
Alignment:
Q  51 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 150  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2046239 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacagctttttaggcttcttac 2046140  T
Q  151 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  2046139 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgtttattttgcagttcaggaattttcaaattcggggttgaaataagagtatgagcat 2046040  T
Q  251 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgc 306  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2046039 ttatttagtttgatttttggttatttgtaatccgatgactttttgaattggattgc 2045984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 2052010 - 2051974
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  2052010 caaaccctaaccatgatttcctaatttccctcctcct 2051974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 39514243 - 39514207
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  39514243 caaaccctaaccatgatttcctaatttccctcctcct 39514207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 45507290 - 45507254
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  45507290 caaaccctaaccatgatttcctaatttccctcctcct 45507254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 45507439 - 45507403
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  45507439 caaaccctaaccatgatttcctaatttccctcctcct 45507403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 49791648 - 49791612
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  49791648 caaaccctaaccatgatttcctaatttccctcctcct 49791612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 41422 - 41458
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    |||||||||||||||||||||||||||| ||||||||    
T  41422 caaaccctaaccatgatttcctaatttccatcctcct 41458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 41240 - 41276
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41240 caaaccctaaccatgatttcctaatttccctcctcct 41276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 41331 - 41367
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41331 caaaccctaaccatgatttcctaatttccctcctcct 41367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 36132 - 36168
Alignment:
Q  21 caaaccctaaccatgatttcctaatttctatcctcct 57  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36132 caaaccctaaccatgatttcctaatttccctcctcct 36168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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