View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11304_low_1 (Length: 475)
Name: NF11304_low_1
Description: NF11304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11304_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 39931784 - 39931487
Alignment:
| Q |
17 |
aatacttaactagaagaataatagaaagtgcaaattaaaaggtgaagtgcaacaatggatgataagctagaagcatcctcaaaagaagcagatgagagct |
116 |
Q |
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| T |
39931784 |
aatacttaactagaagaataatagaaagtgcaaattaaaaggtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagct |
39931685 |
T |
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| Q |
117 |
taagtcatgggagcaagcgtggcggttggataagttcccctttcttcattggtctctctttttcctttcatcttttaactcatcaaacattattaattca |
216 |
Q |
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| T |
39931684 |
taagtaatgggagcaagcgtggcggttggataagttcccctttcttcattggtctctctttttcctttcatcttttaactcatcaaacattattaattca |
39931585 |
T |
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| Q |
217 |
ctcacttttacatatcaaaatcattttg-tttgagtcttaatcatatagtattcatgattttagctgaaagttaagtaaagtatgatcaataattatc |
313 |
Q |
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| T |
39931584 |
ctcacttttacatatcaaaatcattttgttttgagtcttaatcatgtaatattcatgattttaaccgaaagttaagtaaagtatgatcagtaattatc |
39931487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 314 - 475
Target Start/End: Complemental strand, 39931292 - 39931131
Alignment:
| Q |
314 |
atgtaaatttcactgtttttctcactatnnnnnnntggatcatattatatttacacaaaaaattaagcatgtttatatttaattttatactgttgaataa |
413 |
Q |
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| T |
39931292 |
atgtaaatttcactgtttttctcactataaaaaaatggatcattttatatttacacaaaaaattaagcatgtttatatttaattttatactgttgaataa |
39931193 |
T |
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| Q |
414 |
actataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgt |
475 |
Q |
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| T |
39931192 |
actataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgt |
39931131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 39690611 - 39690783
Alignment:
| Q |
58 |
gtgaagtgcaacaatggatgataagctagaagcatcctcaaaagaagcagatgagagcttaagtcatgggagcaagcgtggcggttggataagttcccct |
157 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||| |||| |
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| T |
39690611 |
gtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagcttgagtattgggagcaaacgtggtggttggataagtttccct |
39690710 |
T |
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| Q |
158 |
ttcttcattgg--tctctctttttcctttcatcttttaactcatcaaacattattaattcactcacttttaca |
228 |
Q |
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| T |
39690711 |
ttcttcattggtctctctctttttcctttcatgttcttactcatcaaacattattaattcactcactcttaca |
39690783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 39699725 - 39699866
Alignment:
| Q |
56 |
aggtgaagtgcaacaatggatgataagctagaagcatcctcaaaagaagcagatgagagcttaagtcatgggagcaagcgtggcggttggataagttccc |
155 |
Q |
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| T |
39699725 |
aggtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagtttgagtattgggagcaagcgtggtggttggataagtttcc |
39699824 |
T |
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| Q |
156 |
ctttcttcattggtctctctttttcctttcatcttttaactc |
197 |
Q |
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| T |
39699825 |
ctttcttcattggtatctcttcttcctttcatctttgaactc |
39699866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 56 - 202
Target Start/End: Complemental strand, 39937113 - 39936980
Alignment:
| Q |
56 |
aggtgaagtgcaacaatggatgataagctagaagcatcctcaaaagaagcagatgagagcttaagtcatgggagcaagcgtggcggttggataagttccc |
155 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| || |
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| T |
39937113 |
aggtgaagtgcaacaatggatggtaagctagcagcatcctcaaaagaagcacatgagagc---------------aagcgtggcggttggataagtttcc |
39937029 |
T |
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| Q |
156 |
ctttcttcattgg--tctctctttttcctttcatcttttaactcatcaa |
202 |
Q |
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| T |
39937028 |
ccttcttcattggtttctctctttttactttcatcttttaactcatcaa |
39936980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 416 - 475
Target Start/End: Original strand, 39691027 - 39691086
Alignment:
| Q |
416 |
tataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgt |
475 |
Q |
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| T |
39691027 |
tataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgt |
39691086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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